STRINGSTRING
ALM08585.1 ALM08585.1 ruvB ruvB ruvA ruvA ALM07074.1 ALM07074.1 priA priA ALM06640.1 ALM06640.1 ALM06720.1 ALM06720.1 ALM06950.1 ALM06950.1 recG recG ALM06978.1 ALM06978.1 ALM07834.1 ALM07834.1 ALM09206.1 ALM09206.1 ALM07897.1 ALM07897.1 ALM08259.1 ALM08259.1 ALM08573.1 ALM08573.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALM08585.1ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily. (1039 aa)
ruvBATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (340 aa)
ruvAATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (193 aa)
ALM07074.1ATP-dependent DNA helicase RecQ; Functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. (702 aa)
priAPrimosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (818 aa)
ALM06640.1DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (515 aa)
ALM06720.1ATP-dependent endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
ALM06950.1Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)
recGATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (701 aa)
ALM06978.1ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (774 aa)
ALM07834.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (506 aa)
ALM09206.1ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
ALM07897.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
ALM08259.1Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
ALM08573.1Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
Your Current Organism:
Sediminicola sp. YIK13
NCBI taxonomy Id: 1453352
Other names: S. sp. YIK13
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