STRINGSTRING
ALM08978.1 ALM08978.1 accD accD coaD coaD accA accA ALM06876.1 ALM06876.1 ackA ackA ALM07076.1 ALM07076.1 ALM07113.1 ALM07113.1 coaE coaE ALM07293.1 ALM07293.1 ALM07347.1 ALM07347.1 ALM07366.1 ALM07366.1 ALM09202.1 ALM09202.1 ALM07928.1 ALM07928.1 pdhA pdhA ALM08004.1 ALM08004.1 ALM08047.1 ALM08047.1 coaX coaX ALM08082.1 ALM08082.1 ALM08172.1 ALM08172.1 ALM09279.1 ALM09279.1 ALM08849.1 ALM08849.1 ALM09332.1 ALM09332.1 ALM08863.1 ALM08863.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALM08978.1Pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (325 aa)
accDAcetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA. (288 aa)
coaDPhosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (152 aa)
accAacetyl-CoA carboxyl transferase; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (317 aa)
ALM06876.1Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. (697 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (397 aa)
ALM07076.1palmitoyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
ALM07113.1Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)
coaEdephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. (193 aa)
ALM07293.1Phosphopantothenoylcysteine decarboxylase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (401 aa)
ALM07347.1Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
ALM07366.1Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
ALM09202.1MFS transporter; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (734 aa)
ALM07928.1Pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (552 aa)
pdhAPyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (332 aa)
ALM08004.1acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. (635 aa)
ALM08047.1hydroxymethylglutaryl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HMG-CoA reductase family. (441 aa)
coaXPantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis. (242 aa)
ALM08082.1Diphosphomevalonate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
ALM08172.1Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
ALM09279.1Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)
ALM08849.1Lactoylglutathione lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
ALM09332.1Biotin carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (497 aa)
ALM08863.12-oxoglutarate dehydrogenase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (409 aa)
Your Current Organism:
Sediminicola sp. YIK13
NCBI taxonomy Id: 1453352
Other names: S. sp. YIK13
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