STRINGSTRING
ALM06847.1 ALM06847.1 ALM06870.1 ALM06870.1 ALM06892.1 ALM06892.1 ALM06910.1 ALM06910.1 ALM06912.1 ALM06912.1 ALM06914.1 ALM06914.1 ALM06919.1 ALM06919.1 tpx tpx ALM06938.1 ALM06938.1 recG recG ALM06975.1 ALM06975.1 ALM06980.1 ALM06980.1 ALM06984.1 ALM06984.1 ALM06988.1 ALM06988.1 ALM06997.1 ALM06997.1 ALM07005.1 ALM07005.1 ung ung ALM07007.1 ALM07007.1 ALM07010.1 ALM07010.1 ALM07023.1 ALM07023.1 ALM07031.1 ALM07031.1 ALM07035.1 ALM07035.1 ALM07054.1 ALM07054.1 ALM07056.1 ALM07056.1 ALM07071.1 ALM07071.1 ALM07074.1 ALM07074.1 ALM07082.1 ALM07082.1 ALM07083.1 ALM07083.1 ALM07086.1 ALM07086.1 ALM07110.1 ALM07110.1 ALM07111.1 ALM07111.1 ALM07145.1 ALM07145.1 ychF ychF msrA msrA ALM07180.1 ALM07180.1 ALM07194.1 ALM07194.1 ALM07197.1 ALM07197.1 nth nth ALM07199.1 ALM07199.1 ALM07200.1 ALM07200.1 ALM07201.1 ALM07201.1 ALM07208.1 ALM07208.1 ALM07225.1 ALM07225.1 ALM07233.1 ALM07233.1 ALM07241.1 ALM07241.1 ALM07252.1 ALM07252.1 ALM07254.1 ALM07254.1 ALM07255.1 ALM07255.1 ALM09179.1 ALM09179.1 ALM07263.1 ALM07263.1 ALM07264.1 ALM07264.1 ALM07265.1 ALM07265.1 clpB clpB ALM09181.1 ALM09181.1 ALM07286.1 ALM07286.1 ALM07291.1 ALM07291.1 ligA ligA ALM07333.1 ALM07333.1 ALM07334.1 ALM07334.1 ALM07341.1 ALM07341.1 ALM07357.1 ALM07357.1 ALM07385.1 ALM07385.1 ALM07387.1 ALM07387.1 ALM07408.1 ALM07408.1 ALM07417.1 ALM07417.1 ALM07418.1 ALM07418.1 ALM07419.1 ALM07419.1 ALM07425.1 ALM07425.1 ALM07426.1 ALM07426.1 ALM07427.1 ALM07427.1 ALM07428.1 ALM07428.1 ALM07437.1 ALM07437.1 ALM07448.1 ALM07448.1 ALM07450.1 ALM07450.1 ALM07452.1 ALM07452.1 ALM07458.1 ALM07458.1 ALM07460.1 ALM07460.1 ALM07461.1 ALM07461.1 ALM07462.1 ALM07462.1 ALM07468.1 ALM07468.1 mutL mutL recF recF ALM07541.1 ALM07541.1 ALM09206.1 ALM09206.1 ALM07546.1 ALM07546.1 msrA-2 msrA-2 ALM07564.1 ALM07564.1 ALM07568.1 ALM07568.1 ALM07570.1 ALM07570.1 uvrB uvrB ALM07611.1 ALM07611.1 ALM07625.1 ALM07625.1 ALM07627.1 ALM07627.1 dnaJ dnaJ ALM07653.1 ALM07653.1 ALM07691.1 ALM07691.1 ALM07696.1 ALM07696.1 dacA dacA ALM09224.1 ALM09224.1 ALM07742.1 ALM07742.1 ALM07743.1 ALM07743.1 ALM07751.1 ALM07751.1 ALM09226.1 ALM09226.1 ALM07758.1 ALM07758.1 ALM07761.1 ALM07761.1 ALM07766.1 ALM07766.1 ALM07767.1 ALM07767.1 ALM07771.1 ALM07771.1 ALM07788.1 ALM07788.1 ALM07789.1 ALM07789.1 ALM07817.1 ALM07817.1 ALM07835.1 ALM07835.1 ALM07843.1 ALM07843.1 ALM07847.1 ALM07847.1 ALM07897.1 ALM07897.1 ALM07914.1 ALM07914.1 ALM07925.1 ALM07925.1 ALM07962.1 ALM07962.1 ALM07996.1 ALM07996.1 ALM07997.1 ALM07997.1 ALM08044.1 ALM08044.1 ALM08135.1 ALM08135.1 dinB dinB ALM08143.1 ALM08143.1 ALM08144.1 ALM08144.1 ruvC ruvC ALM08182.1 ALM08182.1 ALM08183.1 ALM08183.1 mfd mfd ALM08186.1 ALM08186.1 ALM08200.1 ALM08200.1 ALM08213.1 ALM08213.1 ALM08324.1 ALM08324.1 ALM08325.1 ALM08325.1 ALM08337.1 ALM08337.1 ALM08340.1 ALM08340.1 ALM08365.1 ALM08365.1 ALM08373.1 ALM08373.1 ALM08388.1 ALM08388.1 recA recA ALM08400.1 ALM08400.1 ALM08428.1 ALM08428.1 ALM08430.1 ALM08430.1 ALM08489.1 ALM08489.1 ALM08496.1 ALM08496.1 ALM08500.1 ALM08500.1 ALM09297.1 ALM09297.1 ALM08548.1 ALM08548.1 ALM08549.1 ALM08549.1 ALM08550.1 ALM08550.1 ALM08552.1 ALM08552.1 ALM08568.1 ALM08568.1 ALM08586.1 ALM08586.1 ALM08596.1 ALM08596.1 dinB-2 dinB-2 ALM08625.1 ALM08625.1 recO recO uvrC uvrC ALM08661.1 ALM08661.1 ALM08668.1 ALM08668.1 radA radA ALM08672.1 ALM08672.1 ALM08703.1 ALM08703.1 ALM08705.1 ALM08705.1 ALM08727.1 ALM08727.1 ALM08734.1 ALM08734.1 ALM08737.1 ALM08737.1 uppP uppP ALM08750.1 ALM08750.1 ALM08771.1 ALM08771.1 ALM08772.1 ALM08772.1 ALM08775.1 ALM08775.1 ALM08778.1 ALM08778.1 ALM08818.1 ALM08818.1 ALM08830.1 ALM08830.1 ALM08833.1 ALM08833.1 ALM08839.1 ALM08839.1 ALM08842.1 ALM08842.1 polA polA ruvB ruvB ruvA ruvA ALM08911.1 ALM08911.1 ALM08923.1 ALM08923.1 ALM08924.1 ALM08924.1 ALM08934.1 ALM08934.1 ALM08935.1 ALM08935.1 ALM08942.1 ALM08942.1 mutS mutS ALM08983.1 ALM08983.1 ALM08984.1 ALM08984.1 ALM08995.1 ALM08995.1 ALM09013.1 ALM09013.1 ALM09037.1 ALM09037.1 ALM09059.1 ALM09059.1 ALM09064.1 ALM09064.1 ALM09069.1 ALM09069.1 ALM09351.1 ALM09351.1 ALM09074.1 ALM09074.1 ALM09077.1 ALM09077.1 ALM09078.1 ALM09078.1 ALM06415.1 ALM06415.1 ALM06443.1 ALM06443.1 ALM06465.1 ALM06465.1 ALM06472.1 ALM06472.1 ALM06473.1 ALM06473.1 ALM06477.1 ALM06477.1 ALM09095.1 ALM09095.1 ALM06481.1 ALM06481.1 ALM06484.1 ALM06484.1 ALM06492.1 ALM06492.1 ALM09097.1 ALM09097.1 ALM06493.1 ALM06493.1 ALM06505.1 ALM06505.1 ALM06506.1 ALM06506.1 ALM06511.1 ALM06511.1 ALM06514.1 ALM06514.1 ALM06528.1 ALM06528.1 ALM06542.1 ALM06542.1 ALM06553.1 ALM06553.1 ALM06561.1 ALM06561.1 ALM06563.1 ALM06563.1 ALM06566.1 ALM06566.1 recR recR ALM06579.1 ALM06579.1 ALM06613.1 ALM06613.1 ALM09108.1 ALM09108.1 ALM09109.1 ALM09109.1 ALM06629.1 ALM06629.1 ALM06633.1 ALM06633.1 ALM06669.1 ALM06669.1 ALM06681.1 ALM06681.1 ALM06688.1 ALM06688.1 ALM06689.1 ALM06689.1 ALM06697.1 ALM06697.1 lon lon ALM06758.1 ALM06758.1 ALM06764.1 ALM06764.1 ALM06812.1 ALM06812.1 ALM09130.1 ALM09130.1 ALM06824.1 ALM06824.1 katG katG ALM06835.1 ALM06835.1 ALM06848.1 ALM06848.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALM06847.1FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family. (495 aa)
ALM06870.1Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
ALM06892.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
ALM06910.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
ALM06912.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (60 aa)
ALM06914.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family. (235 aa)
ALM06919.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (947 aa)
tpxThiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily. (168 aa)
ALM06938.1Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
recGATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (701 aa)
ALM06975.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
ALM06980.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
ALM06984.1DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
ALM06988.1Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (944 aa)
ALM06997.1Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
ALM07005.1DNA mismatch repair protein MutS; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (723 aa)
unguracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (221 aa)
ALM07007.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
ALM07010.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
ALM07023.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
ALM07031.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (670 aa)
ALM07035.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
ALM07054.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
ALM07056.1Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
ALM07071.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (264 aa)
ALM07074.1ATP-dependent DNA helicase RecQ; Functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. (702 aa)
ALM07082.1Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
ALM07083.1Trehalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)
ALM07086.1RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (163 aa)
ALM07110.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
ALM07111.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)
ALM07145.1Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
ychFGTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (364 aa)
msrAMethionine sulfoxide reductase A; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (180 aa)
ALM07180.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
ALM07194.1Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
ALM07197.1Thiol peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (220 aa)
ALM07199.1RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
ALM07200.1Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (925 aa)
ALM07201.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)
ALM07208.1Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (108 aa)
ALM07225.1DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
ALM07233.1LytTR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
ALM07241.1Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
ALM07252.1Redoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
ALM07254.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
ALM07255.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
ALM09179.1Transaldolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
ALM07263.1LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
ALM07264.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (678 aa)
ALM07265.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
clpBClp protease ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (866 aa)
ALM09181.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
ALM07286.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)
ALM07291.1DNA recombination protein RecN; May be involved in recombinational repair of damaged DNA. (550 aa)
ligADNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (665 aa)
ALM07333.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
ALM07334.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
ALM07341.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
ALM07357.1RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (169 aa)
ALM07385.1RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (180 aa)
ALM07387.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
ALM07408.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
ALM07417.1Osmotically inducible protein C; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
ALM07418.1Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
ALM07419.1RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (176 aa)
ALM07425.1LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
ALM07426.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
ALM07427.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)
ALM07428.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
ALM07437.1Peptide methionine sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
ALM07448.1Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
ALM07450.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
ALM07452.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
ALM07458.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
ALM07460.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (784 aa)
ALM07461.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)
ALM07462.1LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
ALM07468.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
mutLDNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (615 aa)
recFDNA recombination protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (359 aa)
ALM07541.1DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
ALM09206.1ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
ALM07546.1Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (116 aa)
msrA-2Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (221 aa)
ALM07564.1Ohr subfamily peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
ALM07568.1Lysylphosphatidylglycerol synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
ALM07570.1Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
uvrBExcinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (662 aa)
ALM07611.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
ALM07625.1Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
ALM07627.1Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
dnaJMolecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] (375 aa)
ALM07653.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
ALM07691.1Two component regulator three y domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (937 aa)
ALM07696.1DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
dacAMembrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. (262 aa)
ALM09224.1NIPSNAP family containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
ALM07742.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (576 aa)
ALM07743.1Restriction modification system DNA specificity subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
ALM07751.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (594 aa)
ALM09226.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
ALM07758.1Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
ALM07761.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
ALM07766.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
ALM07767.1Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
ALM07771.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
ALM07788.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
ALM07789.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
ALM07817.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
ALM07835.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
ALM07843.1RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (170 aa)
ALM07847.1Rhodopsin; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
ALM07897.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
ALM07914.1RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
ALM07925.1Metallopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
ALM07962.1N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
ALM07996.1Ornithine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
ALM07997.1Flavodoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
ALM08044.1Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (673 aa)
ALM08135.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (686 aa)
dinBDNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (404 aa)
ALM08143.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)
ALM08144.1DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology. (590 aa)
ruvCCrossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (184 aa)
ALM08182.1ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
ALM08183.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (821 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1125 aa)
ALM08186.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
ALM08200.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
ALM08213.1Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
ALM08324.1LytTR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
ALM08325.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (655 aa)
ALM08337.1Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
ALM08340.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
ALM08365.1Cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (157 aa)
ALM08373.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
ALM08388.1Endonuclease; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination. (159 aa)
recARecombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (335 aa)
ALM08400.1RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (177 aa)
ALM08428.1Flavodoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
ALM08430.1Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
ALM08489.1Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family. (182 aa)
ALM08496.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
ALM08500.1Chloramphenicol acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
ALM09297.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
ALM08548.1Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
ALM08549.1Osmotically inducible protein OsmC; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
ALM08550.1Recombinase RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (562 aa)
ALM08552.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
ALM08568.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
ALM08586.1Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (202 aa)
ALM08596.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
dinB-2DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (365 aa)
ALM08625.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family. (254 aa)
recODNA recombination protein RecO; Involved in DNA repair and RecF pathway recombination. (239 aa)
uvrCExcinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (595 aa)
ALM08661.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
ALM08668.1Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
radADNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (453 aa)
ALM08672.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
ALM08703.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
ALM08705.1Adenine glycosylase; Adenine glycosylase active on G-A mispairs. (345 aa)
ALM08727.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (823 aa)
ALM08734.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
ALM08737.1DNA-3-methyladenine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
uppPUDP-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (261 aa)
ALM08750.1Cell division protein FtsX; Required for cell division and gliding motility. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (292 aa)
ALM08771.1ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
ALM08772.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
ALM08775.1Cysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)
ALM08778.1ferredoxin-NADP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
ALM08818.1Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
ALM08830.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
ALM08833.1Type I restriction endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1072 aa)
ALM08839.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
ALM08842.1Guanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. (612 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (945 aa)
ruvBATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (340 aa)
ruvAATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (193 aa)
ALM08911.1SprA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2387 aa)
ALM08923.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)
ALM08924.1Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
ALM08934.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (734 aa)
ALM08935.1LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
ALM08942.1Protein SanA; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
mutSDNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (858 aa)
ALM08983.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
ALM08984.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)
ALM08995.1ferredoxin-NADP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
ALM09013.1RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
ALM09037.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
ALM09059.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
ALM09064.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (166 aa)
ALM09069.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
ALM09351.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)
ALM09074.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
ALM09077.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
ALM09078.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
ALM06415.1RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (169 aa)
ALM06443.1Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
ALM06465.1Phosphatidic acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
ALM06472.1Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)
ALM06473.1Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family. (433 aa)
ALM06477.1NGG1p interacting factor 3 protein, NIF3; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. (364 aa)
ALM09095.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (726 aa)
ALM06481.1RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
ALM06484.1RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
ALM06492.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
ALM09097.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
ALM06493.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
ALM06505.1Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
ALM06506.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (616 aa)
ALM06511.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0246 family. (253 aa)
ALM06514.1DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
ALM06528.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
ALM06542.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)
ALM06553.1Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
ALM06561.1Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (748 aa)
ALM06563.12OG-Fe(II) oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
ALM06566.1Sulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
recRRecombinase RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (206 aa)
ALM06579.1Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)
ALM06613.1Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
ALM09108.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
ALM09109.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
ALM06629.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
ALM06633.1RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
ALM06669.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
ALM06681.1RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (164 aa)
ALM06688.1Methionine sulfoxide reductase B; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MsrB Met sulfoxide reductase family. (134 aa)
ALM06689.1Peptide methionine sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)
ALM06697.1DNA-directed RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (185 aa)
lonLon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (817 aa)
ALM06758.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)
ALM06764.1Organic solvent tolerance protein OstA; Derived by automated computational analysis using gene prediction method: Protein Homology. (906 aa)
ALM06812.1Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (98 aa)
ALM09130.1beta-Ig-H3/fasciclin; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
ALM06824.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (656 aa)
katGHydroperoxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (749 aa)
ALM06835.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)
ALM06848.1Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family. (436 aa)
Your Current Organism:
Sediminicola sp. YIK13
NCBI taxonomy Id: 1453352
Other names: S. sp. YIK13
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