(15 nodes) Mitotic Telophase/Cytokinesis network (Monoraphidium neglectum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MNEG_11845	Putative Nipped-B-like protein. (832 aa)
	MNEG_15265	Structural maintenance of chromosomes protein 1. (249 aa)
	MNEG_13109	Uncharacterized protein. (605 aa)
	MNEG_7718	Rad21_Rec8 domain-containing protein. (726 aa)
	MNEG_6867	Putative Sister chromatid cohesion like protein PDS5. (334 aa)
	MNEG_14913	Uncharacterized protein. (346 aa)
	MNEG_6868	Uncharacterized protein. (869 aa)
	MNEG_6000	Structural maintenance of chromosomes protein 3. (995 aa)
	MNEG_13681	Uncharacterized protein. (196 aa)
	MNEG_7752	Uncharacterized protein. (214 aa)
	MNEG_12446	Double-strand-break repair-like protein rad21. (343 aa)
	MNEG_6096	Uncharacterized protein. (276 aa)
	MNEG_2169	Uncharacterized protein. (536 aa)
	MNEG_3965	Uncharacterized protein. (1103 aa)
	MNEG_9616	Putative N-acetyltransferase ESCO2. (355 aa)

Your Current Organism:

Monoraphidium neglectum

NCBI taxonomy Id: 145388
Other names: M. neglectum, Monoraphidium neglectum Heynig & Krienitz, SAG 48.87

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MNEG_11845	MNEG_12446	A0A0D2J8N5	A0A0D2MKU2	Putative Nipped-B-like protein.	Double-strand-break repair-like protein rad21.	0.764
MNEG_11845	MNEG_13681	A0A0D2J8N5	A0A0D2MGW3	Putative Nipped-B-like protein.	Uncharacterized protein.	0.746
MNEG_11845	MNEG_14913	A0A0D2J8N5	A0A0D2LTN5	Putative Nipped-B-like protein.	Uncharacterized protein.	0.557
MNEG_11845	MNEG_15265	A0A0D2J8N5	A0A0D2K9K0	Putative Nipped-B-like protein.	Structural maintenance of chromosomes protein 1.	0.815
MNEG_11845	MNEG_2169	A0A0D2J8N5	A0A0D2MT83	Putative Nipped-B-like protein.	Uncharacterized protein.	0.812
MNEG_11845	MNEG_3965	A0A0D2J8N5	A0A0D2MU13	Putative Nipped-B-like protein.	Uncharacterized protein.	0.814
MNEG_11845	MNEG_6000	A0A0D2J8N5	A0A0D2MFQ4	Putative Nipped-B-like protein.	Structural maintenance of chromosomes protein 3.	0.920
MNEG_11845	MNEG_6867	A0A0D2J8N5	A0A0D2L160	Putative Nipped-B-like protein.	Putative Sister chromatid cohesion like protein PDS5.	0.557
MNEG_11845	MNEG_6868	A0A0D2J8N5	A0A0D2MD25	Putative Nipped-B-like protein.	Uncharacterized protein.	0.557
MNEG_11845	MNEG_7718	A0A0D2J8N5	A0A0D2KYE2	Putative Nipped-B-like protein.	Rad21_Rec8 domain-containing protein.	0.754
MNEG_11845	MNEG_9616	A0A0D2J8N5	A0A0D2MVH9	Putative Nipped-B-like protein.	Putative N-acetyltransferase ESCO2.	0.441
MNEG_12446	MNEG_11845	A0A0D2MKU2	A0A0D2J8N5	Double-strand-break repair-like protein rad21.	Putative Nipped-B-like protein.	0.764
MNEG_12446	MNEG_13109	A0A0D2MKU2	A0A0D2KG58	Double-strand-break repair-like protein rad21.	Uncharacterized protein.	0.746
MNEG_12446	MNEG_14913	A0A0D2MKU2	A0A0D2LTN5	Double-strand-break repair-like protein rad21.	Uncharacterized protein.	0.635
MNEG_12446	MNEG_15265	A0A0D2MKU2	A0A0D2K9K0	Double-strand-break repair-like protein rad21.	Structural maintenance of chromosomes protein 1.	0.950
MNEG_12446	MNEG_2169	A0A0D2MKU2	A0A0D2MT83	Double-strand-break repair-like protein rad21.	Uncharacterized protein.	0.722
MNEG_12446	MNEG_3965	A0A0D2MKU2	A0A0D2MU13	Double-strand-break repair-like protein rad21.	Uncharacterized protein.	0.925
MNEG_12446	MNEG_6000	A0A0D2MKU2	A0A0D2MFQ4	Double-strand-break repair-like protein rad21.	Structural maintenance of chromosomes protein 3.	0.961
MNEG_12446	MNEG_6096	A0A0D2MKU2	A0A0D2MMS4	Double-strand-break repair-like protein rad21.	Uncharacterized protein.	0.764
MNEG_12446	MNEG_6867	A0A0D2MKU2	A0A0D2L160	Double-strand-break repair-like protein rad21.	Putative Sister chromatid cohesion like protein PDS5.	0.661