(10 nodes) Mixed, incl. Regulation of cell shape, and Beta-lactamase activity network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR03329.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (948 aa)
	AJR03330.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	AJR03331.1	Rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family. (425 aa)
	AJR03332.1	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (629 aa)
	AJR03333.1	Rod shape-determining protein MreD; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
	AJR03334.1	Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. (274 aa)
	AJR03335.1	Rod shape-determining protein MreB; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	AJR04809.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (149 aa)
	AJR03336.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (584 aa)
	AJR03337.1	LytTR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR03329.1	AJR03330.1	AW14_06335	AW14_06340	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJR03329.1	AJR03331.1	AW14_06335	AW14_06345	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	0.462
AJR03329.1	AJR03332.1	AW14_06335	AW14_06350	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
AJR03329.1	AJR03333.1	AW14_06335	AW14_06355	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein MreD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
AJR03329.1	AJR03334.1	AW14_06335	AW14_06360	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.	0.462
AJR03329.1	AJR03335.1	AW14_06335	AW14_06365	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein MreB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.456
AJR03330.1	AJR03329.1	AW14_06340	AW14_06335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJR03330.1	AJR03331.1	AW14_06340	AW14_06345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	0.462
AJR03330.1	AJR03332.1	AW14_06340	AW14_06350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
AJR03330.1	AJR03333.1	AW14_06340	AW14_06355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein MreD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
AJR03330.1	AJR03334.1	AW14_06340	AW14_06360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.	0.462
AJR03330.1	AJR03335.1	AW14_06340	AW14_06365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein MreB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.456
AJR03331.1	AJR03329.1	AW14_06345	AW14_06335	Rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
AJR03331.1	AJR03330.1	AW14_06345	AW14_06340	Rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
AJR03331.1	AJR03332.1	AW14_06345	AW14_06350	Rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AJR03331.1	AJR03333.1	AW14_06345	AW14_06355	Rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Rod shape-determining protein MreD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
AJR03331.1	AJR03334.1	AW14_06345	AW14_06360	Rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.	0.911
AJR03331.1	AJR03335.1	AW14_06345	AW14_06365	Rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.	Rod shape-determining protein MreB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
AJR03332.1	AJR03329.1	AW14_06350	AW14_06335	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
AJR03332.1	AJR03330.1	AW14_06350	AW14_06340	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506