(68 nodes) Mixed, incl. Phosphorelay signal transduction system, and CheY-like superfamily network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR02330.1	N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	AJR02331.1	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	AJR02332.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
	AJR02333.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	AJR02336.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
	AJR02337.1	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	AJR02338.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (646 aa)
	AJR04697.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (95 aa)
	AJR02339.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (650 aa)
	AJR04698.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (236 aa)
	AJR02340.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	AJR02342.1	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	AJR02343.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
	AJR02344.1	LemA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
	AJR02345.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
	AJR02346.1	Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	AJR02354.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	AJR02485.1	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	AJR02516.1	Peptidase C25; Derived by automated computational analysis using gene prediction method: Protein Homology. (1297 aa)
	AJR02602.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	AJR02603.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (676 aa)
	AJR02624.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	AJR02625.1	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	AJR02660.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
	AJR02684.1	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	AJR02796.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)
	AJR02895.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
	AJR04768.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (101 aa)
	AJR02896.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	AJR04769.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (552 aa)
	AJR02897.1	8-amino-7-oxononanoate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	AJR02898.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	AJR03117.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	AJR03132.1	RNA polymerase sigma54 factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
	AJR03152.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
	AJR03323.1	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	AJR03347.1	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	AJR04816.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (202 aa)
	AJR04817.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (626 aa)
	AJR03453.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	AJR03454.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	AJR03455.1	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	AJR03456.1	Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	AJR04893.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1300 aa)
	AJR04006.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	AJR04080.1	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	AJR04081.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
	AJR04082.1	Heme transporter CcmB; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	AJR04083.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (826 aa)
	AJR04084.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	AJR04141.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	AJR04932.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (461 aa)
	AJR04274.1	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
	AJR04383.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	AJR04467.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1360 aa)
	AJR04530.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1348 aa)
	AJR04545.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1347 aa)
	AJR04547.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AJR04548.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
	AJR04640.1	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	AJR04672.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
	AJR05008.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (68 aa)
	AJR05009.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (119 aa)
	AJR05010.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (130 aa)
	AJR04675.1	SsrA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (49 aa)
	AJR04676.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
	AJR04677.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	AJR04678.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (595 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR02330.1	AJR02331.1	AW14_00400	AW14_00405	N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AJR02330.1	AJR02332.1	AW14_00400	AW14_00410	N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
AJR02330.1	AJR02333.1	AW14_00400	AW14_00420	N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
AJR02330.1	AJR02485.1	AW14_00400	AW14_01310	N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AJR02330.1	AJR02516.1	AW14_00400	AW14_01480	N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase C25; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
AJR02330.1	AJR02684.1	AW14_00400	AW14_02515	N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
AJR02330.1	AJR04141.1	AW14_00400	AW14_11300	N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
AJR02331.1	AJR02330.1	AW14_00405	AW14_00400	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AJR02331.1	AJR02332.1	AW14_00405	AW14_00410	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AJR02331.1	AJR02333.1	AW14_00405	AW14_00420	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
AJR02332.1	AJR02330.1	AW14_00410	AW14_00400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
AJR02332.1	AJR02331.1	AW14_00410	AW14_00405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AJR02332.1	AJR02333.1	AW14_00410	AW14_00420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
AJR02332.1	AJR02336.1	AW14_00410	AW14_00435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
AJR02333.1	AJR02330.1	AW14_00420	AW14_00400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
AJR02333.1	AJR02331.1	AW14_00420	AW14_00405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
AJR02333.1	AJR02332.1	AW14_00420	AW14_00410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
AJR02336.1	AJR02332.1	AW14_00435	AW14_00410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
AJR02336.1	AJR02337.1	AW14_00435	AW14_00440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AJR02336.1	AJR02338.1	AW14_00435	AW14_00445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463