(44 nodes) Phosphorelay signal transduction system, and CheY-like superfamily network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR02354.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	AJR02602.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	AJR02603.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (676 aa)
	AJR02624.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	AJR02625.1	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	AJR02660.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
	AJR02796.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)
	AJR02895.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
	AJR04768.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (101 aa)
	AJR02896.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	AJR04769.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (552 aa)
	AJR02897.1	8-amino-7-oxononanoate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	AJR02898.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	AJR03117.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	AJR03132.1	RNA polymerase sigma54 factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
	AJR03152.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
	AJR03323.1	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	AJR03347.1	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	AJR04816.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (202 aa)
	AJR04817.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (626 aa)
	AJR03453.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	AJR03454.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	AJR03455.1	Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	AJR03456.1	Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	AJR04893.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1300 aa)
	AJR04006.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	AJR04080.1	Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	AJR04081.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
	AJR04082.1	Heme transporter CcmB; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	AJR04083.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (826 aa)
	AJR04084.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	AJR04932.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (461 aa)
	AJR04274.1	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
	AJR04383.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	AJR04467.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1360 aa)
	AJR04530.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1348 aa)
	AJR04545.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1347 aa)
	AJR04547.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AJR04548.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
	AJR04640.1	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	AJR04675.1	SsrA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (49 aa)
	AJR04676.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
	AJR04677.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	AJR04678.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (595 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR02354.1	AJR02660.1	AW14_00575	AW14_02365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
AJR02354.1	AJR03152.1	AW14_00575	AW14_05345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
AJR02354.1	AJR03347.1	AW14_00575	AW14_06440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AJR02354.1	AJR03453.1	AW14_00575	AW14_07245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
AJR02354.1	AJR03454.1	AW14_00575	AW14_07250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
AJR02354.1	AJR04083.1	AW14_00575	AW14_10985	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
AJR02354.1	AJR04274.1	AW14_00575	AW14_12070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
AJR02354.1	AJR04467.1	AW14_00575	AW14_13185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
AJR02354.1	AJR04530.1	AW14_00575	AW14_13685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
AJR02354.1	AJR04545.1	AW14_00575	AW14_13780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
AJR02354.1	AJR04893.1	AW14_00575	AW14_08880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.693
AJR02354.1	AJR04932.1	AW14_00575	AW14_11400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.652
AJR02602.1	AJR02603.1	AW14_02025	AW14_02030	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AJR02602.1	AJR02896.1	AW14_02025	AW14_03825	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.694
AJR02602.1	AJR03117.1	AW14_02025	AW14_05150	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
AJR02602.1	AJR03152.1	AW14_02025	AW14_05345	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
AJR02602.1	AJR03323.1	AW14_02025	AW14_06305	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AJR02602.1	AJR04383.1	AW14_02025	AW14_12725	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
AJR02602.1	AJR04467.1	AW14_02025	AW14_13185	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AJR02602.1	AJR04530.1	AW14_02025	AW14_13685	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401