(13 nodes) Mixed, incl. Helix_turn_helix, Lux Regulon, and Histidine kinase network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR02602.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	AJR02603.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (676 aa)
	AJR02895.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
	AJR04768.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (101 aa)
	AJR02896.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	AJR04769.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (552 aa)
	AJR02897.1	8-amino-7-oxononanoate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	AJR02898.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	AJR03117.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	AJR03323.1	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	AJR04816.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (202 aa)
	AJR04817.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (626 aa)
	AJR04383.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR02602.1	AJR02603.1	AW14_02025	AW14_02030	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AJR02602.1	AJR02896.1	AW14_02025	AW14_03825	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.694
AJR02602.1	AJR03117.1	AW14_02025	AW14_05150	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
AJR02602.1	AJR03323.1	AW14_02025	AW14_06305	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AJR02602.1	AJR04383.1	AW14_02025	AW14_12725	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
AJR02602.1	AJR04769.1	AW14_02025	AW14_03830	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.676
AJR02602.1	AJR04816.1	AW14_02025	AW14_06585	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.721
AJR02602.1	AJR04817.1	AW14_02025	AW14_06590	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.809
AJR02603.1	AJR02602.1	AW14_02030	AW14_02025	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AJR02603.1	AJR02896.1	AW14_02030	AW14_03825	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
AJR02603.1	AJR03117.1	AW14_02030	AW14_05150	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
AJR02603.1	AJR03323.1	AW14_02030	AW14_06305	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
AJR02603.1	AJR04816.1	AW14_02030	AW14_06585	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.844
AJR02895.1	AJR04768.1	AW14_03815	AW14_03820	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.551
AJR02895.1	AJR04769.1	AW14_03815	AW14_03830	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.488
AJR02896.1	AJR02602.1	AW14_03825	AW14_02025	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.694
AJR02896.1	AJR02603.1	AW14_03825	AW14_02030	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
AJR02896.1	AJR02897.1	AW14_03825	AW14_03835	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	8-amino-7-oxononanoate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
AJR02896.1	AJR02898.1	AW14_03825	AW14_03840	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
AJR02896.1	AJR04383.1	AW14_03825	AW14_12725	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849