(27 nodes) Mixed, incl. Protein transport, and TonB, C-terminal network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR02305.1	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (709 aa)
	AJR02309.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
	AJR02521.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	AJR02522.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
	AJR02523.1	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AJR02524.1	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	AJR02881.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AJR02882.1	Murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)
	AJR02936.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
	AJR03105.1	Copper transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1170 aa)
	AJR03106.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	AJR03107.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
	AJR03108.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	AJR03126.1	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AJR03128.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
	AJR03129.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	AJR03174.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	dacA	Membrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. (261 aa)
	AJR03769.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	AJR04134.1	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	AJR04135.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AJR04136.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	AJR04137.1	ATP-dependent endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	AJR04138.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	AJR04440.1	Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (682 aa)
	AJR04442.1	Hydrolase Nlp/P60; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	AJR04550.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR02305.1	AJR02309.1	AW14_00235	AW14_00255	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AJR02305.1	AJR02521.1	AW14_00235	AW14_01515	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
AJR02305.1	AJR02881.1	AW14_00235	AW14_03745	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
AJR02305.1	AJR02882.1	AW14_00235	AW14_03750	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AJR02305.1	AJR03174.1	AW14_00235	AW14_05460	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
AJR02305.1	AJR03769.1	AW14_00235	AW14_09215	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
AJR02305.1	AJR04136.1	AW14_00235	AW14_11270	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
AJR02305.1	AJR04550.1	AW14_00235	AW14_13805	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
AJR02309.1	AJR02305.1	AW14_00255	AW14_00235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AJR02309.1	AJR02521.1	AW14_00255	AW14_01515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
AJR02309.1	AJR02881.1	AW14_00255	AW14_03745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
AJR02309.1	AJR03106.1	AW14_00255	AW14_05095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
AJR02309.1	AJR03107.1	AW14_00255	AW14_05100	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
AJR02309.1	AJR03126.1	AW14_00255	AW14_05205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
AJR02309.1	AJR03128.1	AW14_00255	AW14_05215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AJR02309.1	AJR03129.1	AW14_00255	AW14_05220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AJR02309.1	AJR03174.1	AW14_00255	AW14_05460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AJR02309.1	AJR03769.1	AW14_00255	AW14_09215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR02309.1	AJR04135.1	AW14_00255	AW14_11265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AJR02309.1	AJR04136.1	AW14_00255	AW14_11270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775