(5 nodes) Penicillin binding, and PPIC-type PPIASE domain network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR02305.1	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (709 aa)
	AJR02309.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
	AJR02881.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AJR02882.1	Murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)
	AJR03174.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR02305.1	AJR02309.1	AW14_00235	AW14_00255	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AJR02305.1	AJR02881.1	AW14_00235	AW14_03745	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
AJR02305.1	AJR02882.1	AW14_00235	AW14_03750	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AJR02305.1	AJR03174.1	AW14_00235	AW14_05460	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
AJR02309.1	AJR02305.1	AW14_00255	AW14_00235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AJR02309.1	AJR02881.1	AW14_00255	AW14_03745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
AJR02309.1	AJR03174.1	AW14_00255	AW14_05460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AJR02881.1	AJR02305.1	AW14_03745	AW14_00235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
AJR02881.1	AJR02309.1	AW14_03745	AW14_00255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
AJR02881.1	AJR02882.1	AW14_03745	AW14_03750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
AJR02881.1	AJR03174.1	AW14_03745	AW14_05460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
AJR02882.1	AJR02305.1	AW14_03750	AW14_00235	Murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AJR02882.1	AJR02881.1	AW14_03750	AW14_03745	Murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
AJR02882.1	AJR03174.1	AW14_03750	AW14_05460	Murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AJR03174.1	AJR02305.1	AW14_05460	AW14_00235	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
AJR03174.1	AJR02309.1	AW14_05460	AW14_00255	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AJR03174.1	AJR02881.1	AW14_05460	AW14_03745	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
AJR03174.1	AJR02882.1	AW14_05460	AW14_03750	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449