(5 nodes) Biopolymer transport protein ExbD/TolR, and MotA/TolQ/ExbB proton channel network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR02936.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
	AJR03126.1	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AJR03128.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
	AJR03129.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	AJR03769.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR02936.1	AJR03128.1	AW14_04065	AW14_05215	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
AJR02936.1	AJR03129.1	AW14_04065	AW14_05220	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
AJR02936.1	AJR03769.1	AW14_04065	AW14_09215	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
AJR03126.1	AJR03128.1	AW14_05205	AW14_05215	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AJR03126.1	AJR03129.1	AW14_05205	AW14_05220	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AJR03126.1	AJR03769.1	AW14_05205	AW14_09215	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
AJR03128.1	AJR02936.1	AW14_05215	AW14_04065	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
AJR03128.1	AJR03126.1	AW14_05215	AW14_05205	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AJR03128.1	AJR03129.1	AW14_05215	AW14_05220	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AJR03128.1	AJR03769.1	AW14_05215	AW14_09215	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
AJR03129.1	AJR02936.1	AW14_05220	AW14_04065	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
AJR03129.1	AJR03126.1	AW14_05220	AW14_05205	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AJR03129.1	AJR03128.1	AW14_05220	AW14_05215	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AJR03129.1	AJR03769.1	AW14_05220	AW14_09215	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
AJR03769.1	AJR02936.1	AW14_09215	AW14_04065	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
AJR03769.1	AJR03126.1	AW14_09215	AW14_05205	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
AJR03769.1	AJR03128.1	AW14_09215	AW14_05215	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
AJR03769.1	AJR03129.1	AW14_09215	AW14_05220	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912