(17 nodes) Mixed, incl. RNA polymerase sigma factor 70, region 4 type 2, and Protein of unknown function DUF2911 network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR02495.1	Peptidase M3; Derived by automated computational analysis using gene prediction method: Protein Homology. (677 aa)
	AJR02496.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
	AJR02497.1	Glycine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
	AJR02827.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
	AJR02828.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (180 aa)
	AJR04760.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (479 aa)
	AJR03767.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	AJR03768.1	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (164 aa)
	AJR04005.1	Peptidase M61; Derived by automated computational analysis using gene prediction method: Protein Homology. (630 aa)
	AJR04047.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
	AJR04048.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)
	AJR04049.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
	AJR04924.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (467 aa)
	AJR04057.1	X-prolyl-dipeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (610 aa)
	AJR04058.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	AJR04295.1	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)
	AJR05027.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (2745 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR02495.1	AJR02496.1	AW14_01375	AW14_01380	Peptidase M3; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.615
AJR02495.1	AJR02497.1	AW14_01375	AW14_01385	Peptidase M3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
AJR02496.1	AJR02495.1	AW14_01380	AW14_01375	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Peptidase M3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
AJR02496.1	AJR02497.1	AW14_01380	AW14_01385	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Glycine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
AJR02496.1	AJR02828.1	AW14_01380	AW14_03405	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.640
AJR02496.1	AJR03768.1	AW14_01380	AW14_09210	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.656
AJR02496.1	AJR04048.1	AW14_01380	AW14_10775	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.514
AJR02496.1	AJR04295.1	AW14_01380	AW14_12185	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.470
AJR02497.1	AJR02495.1	AW14_01385	AW14_01375	Glycine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
AJR02497.1	AJR02496.1	AW14_01385	AW14_01380	Glycine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.879
AJR02497.1	AJR04049.1	AW14_01385	AW14_10780	Glycine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.456
AJR02497.1	AJR04924.1	AW14_01385	AW14_10785	Glycine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.435
AJR02827.1	AJR02828.1	AW14_03400	AW14_03405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.697
AJR02827.1	AJR04760.1	AW14_03400	AW14_03410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.847
AJR02828.1	AJR02496.1	AW14_03405	AW14_01380	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.640
AJR02828.1	AJR02827.1	AW14_03405	AW14_03400	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
AJR02828.1	AJR03768.1	AW14_03405	AW14_09210	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.758
AJR02828.1	AJR04295.1	AW14_03405	AW14_12185	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.774
AJR02828.1	AJR04760.1	AW14_03405	AW14_03410	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.806
AJR03767.1	AJR03768.1	AW14_09205	AW14_09210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.827