(7 nodes) Mixed, incl. PL-6 family, and Alginate lyase network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR04347.1	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AJR04348.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
	AJR04349.1	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AJR04350.1	Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	AJR04353.1	Heparinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (775 aa)
	AJR04354.1	Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (768 aa)
	AJR04954.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (583 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR04347.1	AJR04348.1	AW14_12480	AW14_12485	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
AJR04347.1	AJR04349.1	AW14_12480	AW14_12490	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.829
AJR04347.1	AJR04350.1	AW14_12480	AW14_12495	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AJR04347.1	AJR04353.1	AW14_12480	AW14_12520	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heparinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AJR04347.1	AJR04354.1	AW14_12480	AW14_12525	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
AJR04347.1	AJR04954.1	AW14_12480	AW14_12550	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.646
AJR04348.1	AJR04347.1	AW14_12485	AW14_12480	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
AJR04348.1	AJR04349.1	AW14_12485	AW14_12490	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AJR04348.1	AJR04350.1	AW14_12485	AW14_12495	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
AJR04348.1	AJR04353.1	AW14_12485	AW14_12520	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heparinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
AJR04348.1	AJR04354.1	AW14_12485	AW14_12525	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJR04348.1	AJR04954.1	AW14_12485	AW14_12550	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.756
AJR04349.1	AJR04347.1	AW14_12490	AW14_12480	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.829
AJR04349.1	AJR04348.1	AW14_12490	AW14_12485	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AJR04349.1	AJR04350.1	AW14_12490	AW14_12495	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AJR04349.1	AJR04353.1	AW14_12490	AW14_12520	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heparinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
AJR04349.1	AJR04354.1	AW14_12490	AW14_12525	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AJR04349.1	AJR04954.1	AW14_12490	AW14_12550	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.705
AJR04350.1	AJR04347.1	AW14_12495	AW14_12480	Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AJR04350.1	AJR04348.1	AW14_12495	AW14_12485	Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746