(27 nodes) Mixed, incl. Starch and sucrose metabolism, and PKD domain network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR02903.1	Fibronectin; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)
	AJR02904.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	AJR02905.1	Sugar:proton symporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (521 aa)
	AJR02906.1	Glycosyl hydrolase family 30; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 30 family. (498 aa)
	AJR02907.1	Glycosyl hydrolase family 17; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	AJR02908.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1150 aa)
	AJR02909.1	Peptidoglycan N-acetylglucosamine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (614 aa)
	AJR02910.1	Glycosyl hydrolase family 16; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AJR02911.1	Glycosyl hydrolase family 16; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
	AJR02912.1	Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1062 aa)
	AJR03219.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	AJR03220.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (256 aa)
	AJR03221.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
	AJR03222.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (961 aa)
	AJR04801.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (499 aa)
	AJR03223.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1028 aa)
	AJR03224.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (591 aa)
	AJR03225.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
	AJR03226.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1094 aa)
	AJR03227.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	AJR03228.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family. (759 aa)
	AJR03230.1	Sodium/glucose cotransporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (550 aa)
	AJR03727.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (792 aa)
	AJR04904.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (618 aa)
	AJR04485.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
	AJR04492.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (718 aa)
	AJR04532.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (753 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR02903.1	AJR02904.1	AW14_03870	AW14_03875	Fibronectin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
AJR02903.1	AJR02905.1	AW14_03870	AW14_03880	Fibronectin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar:proton symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AJR02903.1	AJR02907.1	AW14_03870	AW14_03890	Fibronectin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
AJR02903.1	AJR02908.1	AW14_03870	AW14_03895	Fibronectin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
AJR02903.1	AJR02909.1	AW14_03870	AW14_03900	Fibronectin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan N-acetylglucosamine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
AJR02903.1	AJR02910.1	AW14_03870	AW14_03905	Fibronectin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
AJR02903.1	AJR02911.1	AW14_03870	AW14_03910	Fibronectin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AJR02903.1	AJR02912.1	AW14_03870	AW14_03915	Fibronectin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
AJR02904.1	AJR02903.1	AW14_03875	AW14_03870	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fibronectin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
AJR02904.1	AJR02905.1	AW14_03875	AW14_03880	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar:proton symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
AJR02904.1	AJR02906.1	AW14_03875	AW14_03885	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 30; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 30 family.	0.912
AJR02904.1	AJR02907.1	AW14_03875	AW14_03890	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
AJR02904.1	AJR02908.1	AW14_03875	AW14_03895	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR02904.1	AJR02909.1	AW14_03875	AW14_03900	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan N-acetylglucosamine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AJR02904.1	AJR02910.1	AW14_03875	AW14_03905	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.598
AJR02904.1	AJR02911.1	AW14_03875	AW14_03910	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
AJR02904.1	AJR02912.1	AW14_03875	AW14_03915	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
AJR02904.1	AJR03228.1	AW14_03875	AW14_05775	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.	0.900
AJR02904.1	AJR03727.1	AW14_03875	AW14_08910	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR02904.1	AJR04485.1	AW14_03875	AW14_13300	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900