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| | AJR02604.1 | LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa) |
| | AJR02625.1 | ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa) |
| | AJR02637.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa) |
| | AJR02643.1 | DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa) |
| | AJR02658.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa) |
| | greA | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (157 aa) |
| | AJR02678.1 | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (151 aa) |
| | AJR02680.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial histone-like protein family. (96 aa) |
| | AJR02685.1 | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa) |
| | uvrC | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (597 aa) |
| | radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (452 aa) |
| | AJR02741.1 | Peptidase S24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S24 family. (146 aa) |
| | AJR02742.1 | SOS mutagenesis and repair protein UmuC; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa) |
| | AJR02760.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa) |
| | AJR02767.1 | Iron-dependent repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1115 aa) |
| | AJR02775.1 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa) |
| | AJR02777.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa) |
| | AJR02779.1 | LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa) |
| | AJR02792.1 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa) |
| | AJR02801.1 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa) |
| | recA | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (337 aa) |
| | AJR02828.1 | RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (180 aa) |
| | AJR02831.1 | DNA processing protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa) |
| | AJR02855.1 | PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa) |
| | AJR02896.1 | LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa) |
| | AJR02917.1 | LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (934 aa) |
| | AJR02930.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa) |
| | AJR02931.1 | Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa) |
| | AJR02943.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa) |
| | AJR02957.1 | Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa) |
| | AJR02998.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa) |
| | AJR03001.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa) |
| | AJR03008.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa) |
| | dinB | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (365 aa) |
| | AJR03047.1 | Helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology. (1043 aa) |
| | AJR03051.1 | DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa) |
| | AJR03068.1 | 3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa) |
| | AJR03093.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa) |
| | AJR03095.1 | Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (89 aa) |
| | AJR03108.1 | TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa) |
| | AJR03117.1 | LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa) |
| | AJR03122.1 | RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. (193 aa) |
| | AJR02368.1 | Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa) |
| | xerC | Integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (296 aa) |
| | nusG | Antitermination protein NusG; Participates in transcription elongation, termination and antitermination. (184 aa) |
| | rpoB | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1270 aa) |
| | rpoC | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1434 aa) |
| | AJR02352.1 | Transposase; Required for the transposition of the insertion element. (398 aa) |
| | AJR02343.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa) |
| | AJR02337.1 | Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa) |
| | AJR02324.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa) |
| | AJR02321.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa) |
| | mraZ | MraZ family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MraZ family. (156 aa) |
| | AJR03132.1 | RNA polymerase sigma54 factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa) |
| | polA | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (944 aa) |
| | AJR03152.1 | ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa) |
| | ruvB | ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (340 aa) |
| | AJR03164.1 | LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa) |
| | ruvA | ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (193 aa) |
| | AJR03171.1 | SprA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2435 aa) |
| | AJR03212.1 | RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (287 aa) |
| | mutS | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (870 aa) |
| | AJR03221.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa) |
| | AJR04274.1 | Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa) |
| | AJR04286.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa) |
| | AJR04288.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (219 aa) |
| | AJR04295.1 | RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa) |
| | AJR04296.1 | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (927 aa) |
| | AJR04307.1 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (104 aa) |
| | lon | Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (816 aa) |
| | AJR04324.1 | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (943 aa) |
| | AJR04349.1 | GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa) |
| | AJR04359.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (66 aa) |
| | AJR04361.1 | Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa) |
| | AJR04363.1 | Restriction endonuclease subunit S; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa) |
| | AJR04365.1 | DEAD/DEAH box helicase; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1037 aa) |
| | AJR04957.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (701 aa) |
| | AJR04368.1 | Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (371 aa) |
| | AJR04960.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (191 aa) |
| | AJR04378.1 | Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa) |
| | AJR04386.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa) |
| | AJR04399.1 | Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa) |
| | AJR04403.1 | ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (563 aa) |
| | AJR04421.1 | Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa) |
| | AJR04434.1 | AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa) |
| | gyrA | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (854 aa) |
| | AJR04453.1 | Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology. (809 aa) |
| | AJR04467.1 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1360 aa) |
| | AJR04512.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa) |
| | AJR04525.1 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa) |
| | AJR04530.1 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1348 aa) |
| | AJR04545.1 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1347 aa) |
| | AJR04547.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa) |
| | AJR04556.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa) |
| | dnaA | Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (475 aa) |
| | AJR04596.1 | DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (513 aa) |
| | AJR04602.1 | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa) |
| | AJR04611.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa) |
| | uvrB | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (667 aa) |
| | AJR04640.1 | Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa) |
| | AJR04653.1 | Transcription activator effector-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa) |
| | AJR04656.1 | ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa) |
| | AJR05004.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (209 aa) |
| | AJR04671.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (56 aa) |
| | AJR04674.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (67 aa) |
| | AJR04676.1 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa) |
| | AJR04677.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa) |
| | AJR04678.1 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (595 aa) |
| | AJR04946.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (148 aa) |
| | AJR04233.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa) |
| | AJR04211.1 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (517 aa) |
| | AJR04204.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa) |
| | AJR04188.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa) |
| | AJR04186.1 | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (787 aa) |
| | AJR04179.1 | DNA mismatch repair protein MutS; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (723 aa) |
| | AJR04932.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (461 aa) |
| | AJR04144.1 | DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa) |
| | AJR04143.1 | Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa) |
| | AJR04133.1 | DNA polymerase III subunit gamma/tau; Derived by automated computational analysis using gene prediction method: Protein Homology. (576 aa) |
| | xerC-2 | Integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (298 aa) |
| | AJR04103.1 | Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa) |
| | AJR04097.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa) |
| | AJR04086.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa) |
| | AJR04085.1 | LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa) |
| | AJR04083.1 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (826 aa) |
| | AJR04082.1 | Heme transporter CcmB; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa) |
| | AJR04078.1 | LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa) |
| | AJR04926.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (229 aa) |
| | AJR04063.1 | RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa) |
| | AJR04052.1 | Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa) |
| | AJR04048.1 | RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa) |
| | AJR04034.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa) |
| | AJR04026.1 | DNA topoisomerase IV subunit A; Decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; Derived by automated computational analysis using gene prediction method: Protein Homology. (893 aa) |
| | AJR04025.1 | DNA topoisomerase IV subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (616 aa) |
| | AJR04008.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa) |
| | AJR03973.1 | DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa) |
| | AJR03944.1 | Catabolite gene activator protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa) |
| | AJR03926.1 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (372 aa) |
| | AJR03883.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa) |
| | AJR03874.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial histone-like protein family. (90 aa) |
| | AJR03870.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa) |
| | AJR03863.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (817 aa) |
| | AJR03807.1 | Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa) |
| | AJR03806.1 | ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (734 aa) |
| | AJR03784.1 | ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (621 aa) |
| | AJR04910.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (292 aa) |
| | AJR03771.1 | LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa) |
| | AJR03768.1 | RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (164 aa) |
| | AJR03765.1 | DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology. (763 aa) |
| | AJR03757.1 | ATP-dependent DNA helicase RecQ; Functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. (714 aa) |
| | AJR03739.1 | PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa) |
| | AJR04893.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1300 aa) |
| | AJR03720.1 | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa) |
| | AJR03716.1 | LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa) |
| | AJR03283.1 | Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa) |
| | AJR03319.1 | RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (187 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (652 aa) |
| | AJR03323.1 | Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa) |
| | AJR03706.1 | Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family. (302 aa) |
| | AJR03337.1 | LytTR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa) |
| | AJR03347.1 | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (829 aa) |
| | AJR03361.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa) |
| | AJR04816.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (202 aa) |
| | AJR03368.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa) |
| | AJR03373.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa) |
| | AJR03383.1 | Growth inhibitor PemK; Toxic component of a type II toxin-antitoxin (TA) system. (107 aa) |
| | AJR03384.1 | MazF family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (81 aa) |
| | AJR03388.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa) |
| | AJR03393.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (84 aa) |
| | AJR03394.1 | DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa) |
| | AJR03395.1 | Restriction endonuclease subunit S; Derived by automated computational analysis using gene prediction method: Protein Homology. (1288 aa) |
| | recR | Recombinase RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (205 aa) |
| | AJR03431.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa) |
| | AJR03437.1 | RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (176 aa) |
| | AJR03444.1 | TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa) |
| | AJR03454.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa) |
| | AJR03456.1 | Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa) |
| | AJR03472.1 | RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (180 aa) |
| | AJR03490.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa) |
| | AJR03498.1 | RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (169 aa) |
| | AJR04859.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (230 aa) |
| | AJR04869.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (187 aa) |
| | AJR03555.1 | Derived by automated computational analysis using gene prediction method: Protein Homology. (508 aa) |
| | AJR03556.1 | Restriction endonuclease subunit S; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa) |
| | AJR03560.1 | Restriction endonuclease subunit R; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1077 aa) |
| | AJR03587.1 | RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (287 aa) |
| | AJR03601.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa) |
| | AJR03631.1 | Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa) |
| | AJR03649.1 | RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa) |
| | AJR03654.1 | RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (176 aa) |
| | AJR03664.1 | RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa) |
| | gyrB | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (649 aa) |
| | recF | DNA recombination protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (359 aa) |
| | mutL | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (620 aa) |
| | AJR02413.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa) |
| | AJR02414.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa) |
| | AJR04709.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (209 aa) |
| | AJR02417.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0246 family. (252 aa) |
| | rpoA | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (330 aa) |
| | AJR02477.1 | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa) |
| | AJR02496.1 | RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa) |
| | AJR02519.1 | LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa) |
| | AJR04719.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (116 aa) |
| | AJR04720.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (116 aa) |
| | AJR02592.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa) |
| | AJR02595.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa) |
| | AJR02602.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa) |
