STRINGSTRING
AJR03942.1 AJR03942.1 AJR03919.1 AJR03919.1 AJR03905.1 AJR03905.1 folE-2 folE-2 priA priA pepT pepT AJR03633.1 AJR03633.1 AJR03632.1 AJR03632.1 AJR03592.1 AJR03592.1 folE folE cysS cysS AJR03517.1 AJR03517.1 hutI hutI AJR03506.1 AJR03506.1 AJR03461.1 AJR03461.1 AJR03405.1 AJR03405.1 AJR03400.1 AJR03400.1 dnaG dnaG AJR04807.1 AJR04807.1 AJR03294.1 AJR03294.1 clpX clpX AJR03104.1 AJR03104.1 tadA tadA tdk tdk AJR03021.1 AJR03021.1 AJR02969.1 AJR02969.1 AJR02952.1 AJR02952.1 AJR02929.1 AJR02929.1 AJR04770.1 AJR04770.1 gltX gltX ybeY ybeY ileS ileS AJR02728.1 AJR02728.1 AJR02607.1 AJR02607.1 AJR02514.1 AJR02514.1 AJR02509.1 AJR02509.1 AJR02504.1 AJR02504.1 ftsH ftsH rpoC rpoC alaS alaS dnaJ dnaJ AJR04568.1 AJR04568.1 ribB ribB AJR04957.1 AJR04957.1 AJR04326.1 AJR04326.1 AJR04287.1 AJR04287.1 hisD hisD AJR04182.1 AJR04182.1 rnz rnz folE-3 folE-3 kduI kduI AJR03985.1 AJR03985.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AJR03942.1Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
AJR03919.1GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
AJR03905.1LmbE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (841 aa)
folE-2GTP cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
priAPrimosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (817 aa)
pepTPeptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. (411 aa)
AJR03633.1Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (775 aa)
AJR03632.1Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (753 aa)
AJR03592.1Fructose-bisphosphate aldolase; Catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
folEGTP cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
cysScysteine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family. (493 aa)
AJR03517.1Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
hutIImidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)
AJR03506.1Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
AJR03461.1Peptidase M1; Derived by automated computational analysis using gene prediction method: Protein Homology. (549 aa)
AJR03405.1Peptidase M15; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. (221 aa)
AJR03400.1Mannose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (652 aa)
AJR04807.1Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (894 aa)
AJR03294.15-methyltetrahydrofolate--homocysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
clpXATPase AAA; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (410 aa)
AJR03104.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0753 family. (795 aa)
tadACMP deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (149 aa)
tdkThymidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
AJR03021.1Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (208 aa)
AJR02969.1Carbonic anhydrase; Macrophage inducible 5; Mig-5; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
AJR02952.1CMP deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
AJR02929.1Peptidase M1; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)
AJR04770.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (170 aa)
gltXglutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (502 aa)
ybeYrRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (136 aa)
ileSisoleucyl-tRNA synthase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. (1134 aa)
AJR02728.1Molecular chaperone DnaK; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
AJR02607.1Peptidase M1; Derived by automated computational analysis using gene prediction method: Protein Homology. (855 aa)
AJR02514.1Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (160 aa)
AJR02509.1Metallopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
AJR02504.1Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (553 aa)
ftsHPeptidase M41; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (647 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1434 aa)
alaSalanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (870 aa)
dnaJMolecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] (371 aa)
AJR04568.1Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (334 aa)
ribB3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family. (382 aa)
AJR04957.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (701 aa)
AJR04326.1Metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology. (944 aa)
AJR04287.1Peptidase M14; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
hisDHistidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. (427 aa)
AJR04182.1Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (650 aa)
rnzRibonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (301 aa)
folE-3GTP cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
kduI5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (280 aa)
AJR03985.1Galactose-1-phosphate uridylyltransferase; Catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
Your Current Organism:
Siansivirga zeaxanthinifaciens
NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1
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