(41 nodes) Intracellular signal transduction network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR04678.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (595 aa)
	AJR02338.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (646 aa)
	AJR02354.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	AJR04709.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (209 aa)
	AJR02435.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (681 aa)
	AJR04719.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (116 aa)
	AJR04720.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (116 aa)
	AJR02603.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (676 aa)
	AJR02624.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	AJR02625.1	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	AJR02660.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
	AJR02778.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	AJR02779.1	LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	AJR02796.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)
	AJR04769.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (552 aa)
	AJR03152.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
	AJR03336.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (584 aa)
	AJR03337.1	LytTR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	AJR04817.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (626 aa)
	AJR03424.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
	AJR03453.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	AJR03454.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	dacA	Membrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. (261 aa)
	AJR04893.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1300 aa)
	AJR03770.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
	AJR03771.1	LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	AJR03863.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	AJR04006.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	AJR04077.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (603 aa)
	AJR04081.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
	AJR04083.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (826 aa)
	AJR04084.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	AJR04085.1	LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	AJR04932.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (461 aa)
	AJR04274.1	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
	AJR04383.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	AJR04467.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1360 aa)
	AJR04530.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1348 aa)
	AJR04545.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1347 aa)
	AJR04547.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AJR04548.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR02338.1	AJR03152.1	AW14_00445	AW14_05345	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
AJR02338.1	AJR03453.1	AW14_00445	AW14_07245	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AJR02338.1	AJR04467.1	AW14_00445	AW14_13185	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
AJR02338.1	AJR04530.1	AW14_00445	AW14_13685	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
AJR02338.1	AJR04545.1	AW14_00445	AW14_13780	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
AJR02338.1	AJR04893.1	AW14_00445	AW14_08880	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.529
AJR02338.1	AJR04932.1	AW14_00445	AW14_11400	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.426
AJR02354.1	AJR02660.1	AW14_00575	AW14_02365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
AJR02354.1	AJR03152.1	AW14_00575	AW14_05345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
AJR02354.1	AJR03453.1	AW14_00575	AW14_07245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
AJR02354.1	AJR03454.1	AW14_00575	AW14_07250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
AJR02354.1	AJR04083.1	AW14_00575	AW14_10985	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
AJR02354.1	AJR04274.1	AW14_00575	AW14_12070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
AJR02354.1	AJR04467.1	AW14_00575	AW14_13185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
AJR02354.1	AJR04530.1	AW14_00575	AW14_13685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
AJR02354.1	AJR04545.1	AW14_00575	AW14_13780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
AJR02354.1	AJR04893.1	AW14_00575	AW14_08880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.693
AJR02354.1	AJR04932.1	AW14_00575	AW14_11400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.652
AJR02435.1	AJR02625.1	AW14_01050	AW14_02175	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
AJR02435.1	AJR03152.1	AW14_01050	AW14_05345	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416