(55 nodes) Immunoglobulin-like fold network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR04545.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1347 aa)
	AJR02325.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
	AJR04723.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (2669 aa)
	AJR04729.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1399 aa)
	AJR04748.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (921 aa)
	AJR02902.1	Endo-1,3(4)-beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1587 aa)
	AJR02909.1	Peptidoglycan N-acetylglucosamine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (614 aa)
	AJR02917.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (934 aa)
	AJR02994.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1028 aa)
	AJR04789.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (4084 aa)
	glgB	Glycogen branching protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (635 aa)
	AJR03120.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (650 aa)
	AJR03222.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (961 aa)
	AJR04801.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (499 aa)
	AJR03225.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
	AJR03227.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	AJR03228.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family. (759 aa)
	AJR03243.1	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)
	AJR03447.1	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	AJR03609.1	ApaG; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	AJR03658.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	AJR04893.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1300 aa)
	AJR04894.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (662 aa)
	AJR03727.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (792 aa)
	AJR04901.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (663 aa)
	AJR03817.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
	AJR03869.1	MAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2113 aa)
	AJR04917.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1062 aa)
	AJR04929.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1592 aa)
	AJR04463.1	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family. (811 aa)
	AJR04467.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1360 aa)
	AJR04473.1	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family. (1021 aa)
	AJR04477.1	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family. (896 aa)
	AJR04480.1	Rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (925 aa)
	AJR04481.1	Rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (924 aa)
	AJR04485.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
	AJR04491.1	Glycoside hydrolase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family. (991 aa)
	AJR04492.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (718 aa)
	AJR04498.1	alfa-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (952 aa)
	AJR04508.1	Beta-glucuronidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family. (607 aa)
	AJR04973.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (759 aa)
	AJR04517.1	Rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (918 aa)
	AJR04975.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1031 aa)
	AJR04976.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (84 aa)
	AJR04523.1	Alpha-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (916 aa)
	AJR04979.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1055 aa)
	AJR04986.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (234 aa)
	AJR04987.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1117 aa)
	AJR05027.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (2745 aa)
	AJR04530.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1348 aa)
	AJR04993.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (987 aa)
	AJR04532.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (753 aa)
	AJR04629.1	Gliding motility protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1703 aa)
	AJR04540.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (619 aa)
	AJR04541.1	Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1175 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR02909.1	AJR02917.1	AW14_03900	AW14_03945	Peptidoglycan N-acetylglucosamine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AJR02909.1	AJR03222.1	AW14_03900	AW14_05740	Peptidoglycan N-acetylglucosamine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
AJR02909.1	AJR03225.1	AW14_03900	AW14_05760	Peptidoglycan N-acetylglucosamine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
AJR02909.1	AJR04917.1	AW14_03900	AW14_09785	Peptidoglycan N-acetylglucosamine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.447
AJR02909.1	AJR04986.1	AW14_03900	AW14_13635	Peptidoglycan N-acetylglucosamine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.485
AJR02917.1	AJR02909.1	AW14_03945	AW14_03900	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan N-acetylglucosamine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AJR03222.1	AJR02909.1	AW14_05740	AW14_03900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan N-acetylglucosamine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
AJR03222.1	AJR03225.1	AW14_05740	AW14_05760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
AJR03222.1	AJR03227.1	AW14_05740	AW14_05770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AJR03222.1	AJR04801.1	AW14_05740	AW14_05745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.678
AJR03225.1	AJR02909.1	AW14_05760	AW14_03900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan N-acetylglucosamine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
AJR03225.1	AJR03222.1	AW14_05760	AW14_05740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
AJR03225.1	AJR03227.1	AW14_05760	AW14_05770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855
AJR03225.1	AJR03228.1	AW14_05760	AW14_05775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.	0.441
AJR03225.1	AJR04801.1	AW14_05760	AW14_05745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.604
AJR03227.1	AJR03222.1	AW14_05770	AW14_05740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AJR03227.1	AJR03225.1	AW14_05770	AW14_05760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855
AJR03227.1	AJR03228.1	AW14_05770	AW14_05775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.	0.682
AJR03227.1	AJR04801.1	AW14_05770	AW14_05745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.421
AJR03228.1	AJR03225.1	AW14_05775	AW14_05760	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441