STRINGSTRING
uvrB uvrB AJR02415.1 AJR02415.1 mfd mfd AJR03407.1 AJR03407.1 AJR03512.1 AJR03512.1 AJR04866.1 AJR04866.1 AJR03560.1 AJR03560.1 AJR03757.1 AJR03757.1 secA secA AJR03806.1 AJR03806.1 priA priA AJR03876.1 AJR03876.1 AJR03947.1 AJR03947.1 AJR04067.1 AJR04067.1 recG recG AJR04211.1 AJR04211.1 AJR04234.1 AJR04234.1 AJR04365.1 AJR04365.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
uvrBExcinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (667 aa)
AJR02415.1ATP-dependent RNA helicase RhlE; This helicase is not essential cell growth; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (431 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1115 aa)
AJR03407.1RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
AJR03512.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (615 aa)
AJR04866.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1421 aa)
AJR03560.1Restriction endonuclease subunit R; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1077 aa)
AJR03757.1ATP-dependent DNA helicase RecQ; Functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. (714 aa)
secAPreprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. (1117 aa)
AJR03806.1ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (734 aa)
priAPrimosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (817 aa)
AJR03876.1ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (634 aa)
AJR03947.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
AJR04067.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)
recGATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (700 aa)
AJR04211.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (517 aa)
AJR04234.1Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
AJR04365.1DEAD/DEAH box helicase; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1037 aa)
Your Current Organism:
Siansivirga zeaxanthinifaciens
NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1
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