(16 nodes) Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR02435.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (681 aa)
	AJR02624.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	AJR02660.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
	AJR02796.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)
	AJR03152.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
	AJR03336.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (584 aa)
	AJR03453.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	AJR04893.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1300 aa)
	AJR04006.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	AJR04083.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (826 aa)
	AJR04932.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (461 aa)
	AJR04467.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1360 aa)
	AJR04530.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1348 aa)
	AJR04545.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1347 aa)
	AJR04548.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
	AJR04678.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (595 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR02435.1	AJR03152.1	AW14_01050	AW14_05345	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
AJR02435.1	AJR04083.1	AW14_01050	AW14_10985	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AJR02435.1	AJR04467.1	AW14_01050	AW14_13185	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
AJR02435.1	AJR04530.1	AW14_01050	AW14_13685	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
AJR02435.1	AJR04545.1	AW14_01050	AW14_13780	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
AJR02435.1	AJR04893.1	AW14_01050	AW14_08880	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.594
AJR02624.1	AJR03152.1	AW14_02170	AW14_05345	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
AJR02624.1	AJR03453.1	AW14_02170	AW14_07245	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
AJR02624.1	AJR04006.1	AW14_02170	AW14_10555	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933
AJR02624.1	AJR04083.1	AW14_02170	AW14_10985	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
AJR02624.1	AJR04467.1	AW14_02170	AW14_13185	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
AJR02624.1	AJR04530.1	AW14_02170	AW14_13685	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
AJR02624.1	AJR04545.1	AW14_02170	AW14_13780	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
AJR02624.1	AJR04548.1	AW14_02170	AW14_13795	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AJR02624.1	AJR04893.1	AW14_02170	AW14_08880	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.661
AJR02624.1	AJR04932.1	AW14_02170	AW14_11400	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.758
AJR02660.1	AJR03453.1	AW14_02365	AW14_07245	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.496
AJR02660.1	AJR04083.1	AW14_02365	AW14_10985	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AJR02660.1	AJR04467.1	AW14_02365	AW14_13185	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AJR02660.1	AJR04530.1	AW14_02365	AW14_13685	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438