(16 nodes) Butanoate metabolism network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

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co-expression

protein homology

Your Input:
	AJR02557.1	glutaconyl-CoA decarboxylase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)
	AJR02558.1	Biofilm PGA synthesis protein PgaD; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	AJR02559.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
	AJR02690.1	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	sdhA	Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology. (665 aa)
	AJR02692.1	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	AJR02795.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
	AJR02817.1	succinyl-CoA:3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	AJR02819.1	succinyl-CoA:3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AJR03260.1	Acetolactate synthase catalytic subunit; Catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
	AJR03261.1	Acetohydroxyacid synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	AJR05033.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (797 aa)
	AJR03830.1	hydroxymethylglutaryl-CoA lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	AJR04054.1	3-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	AJR04228.1	Succinate-semialdehyde dehydrogenase; In Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
	AJR04441.1	acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR02557.1	AJR02558.1	AW14_01715	AW14_01720	glutaconyl-CoA decarboxylase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biofilm PGA synthesis protein PgaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AJR02557.1	AJR02559.1	AW14_01715	AW14_01725	glutaconyl-CoA decarboxylase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AJR02557.1	AJR02795.1	AW14_01715	AW14_03225	glutaconyl-CoA decarboxylase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.900
AJR02557.1	AJR03260.1	AW14_01715	AW14_05965	glutaconyl-CoA decarboxylase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetolactate synthase catalytic subunit; Catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
AJR02557.1	AJR03261.1	AW14_01715	AW14_05970	glutaconyl-CoA decarboxylase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetohydroxyacid synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AJR02558.1	AJR02557.1	AW14_01720	AW14_01715	Biofilm PGA synthesis protein PgaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	glutaconyl-CoA decarboxylase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AJR02558.1	AJR02559.1	AW14_01720	AW14_01725	Biofilm PGA synthesis protein PgaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AJR02558.1	AJR02795.1	AW14_01720	AW14_03225	Biofilm PGA synthesis protein PgaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.906
AJR02559.1	AJR02557.1	AW14_01725	AW14_01715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	glutaconyl-CoA decarboxylase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AJR02559.1	AJR02558.1	AW14_01725	AW14_01720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biofilm PGA synthesis protein PgaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AJR02559.1	AJR02795.1	AW14_01725	AW14_03225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.901
AJR02690.1	AJR02692.1	AW14_02550	AW14_02560	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJR02690.1	AJR04228.1	AW14_02550	AW14_11800	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate-semialdehyde dehydrogenase; In Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AJR02690.1	sdhA	AW14_02550	AW14_02555	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR02692.1	AJR02690.1	AW14_02560	AW14_02550	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJR02692.1	AJR04228.1	AW14_02560	AW14_11800	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate-semialdehyde dehydrogenase; In Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR02692.1	sdhA	AW14_02560	AW14_02555	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJR02795.1	AJR02557.1	AW14_03225	AW14_01715	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	glutaconyl-CoA decarboxylase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR02795.1	AJR02558.1	AW14_03225	AW14_01720	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Biofilm PGA synthesis protein PgaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AJR02795.1	AJR02559.1	AW14_03225	AW14_01725	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901