(44 nodes) Mixed, incl. Fatty acid degradation, and Butanoate metabolism network (Serpentinomonas raichei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SRAA_0079	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (283 aa)
	SRAA_0221	Isopropylmalate/homocitrate/citramalate synthase; Identified by MetaGeneAnnotator; putative. (305 aa)
	SRAA_0222	Hypothetical protein; Identified by MetaGeneAnnotator; putative. (150 aa)
	SRAA_0223	Predicted nucleotidyltransferase; Identified by MetaGeneAnnotator; putative. (200 aa)
	SRAA_0224	acetyl/propionyl-CoA carboxylase, alpha subunit; Identified by MetaGeneAnnotator; putative. (675 aa)
	paaG	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative. (259 aa)
	SRAA_0226	acetyl-CoA carboxylase, carboxyltransferase component, subunits alpha and beta; Identified by MetaGeneAnnotator; putative. (535 aa)
	SRAA_0546	Dehydrogenase with different specificities related to short-chain alcohol dehydrogenase; Identified by MetaGeneAnnotator; putative; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (259 aa)
	SRAA_0576	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (420 aa)
	SRAA_0578	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family. (265 aa)
	SRAA_0591	Hypothetical protein; Identified by MetaGeneAnnotator; putative. (115 aa)
	SRAA_0592	Poly(3-hydroxyalkanoate) synthetase; Identified by MetaGeneAnnotator; putative. (583 aa)
	atoB	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
	phbB	Dehydrogenase with different specificities related to short-chain alcohol dehydrogenase; Identified by MetaGeneAnnotator; putative; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (245 aa)
	SRAA_0665	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (420 aa)
	SRAA_0666	Predicted aminoglycoside phosphotransferase; Identified by MetaGeneAnnotator; putative. (360 aa)
	SRAA_0668	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
	SRAA_1207	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	SRAA_1208	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family. (704 aa)
	alkK	acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; Identified by MetaGeneAnnotator; putative. (545 aa)
	SRAA_1317	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (610 aa)
	SRAA_1318	Electron transfer flavoprotein, alpha subunit; Identified by MetaGeneAnnotator; putative. (313 aa)
	SRAA_1319	Electron transfer flavoprotein, beta subunit; Identified by MetaGeneAnnotator; putative. (249 aa)
	SRAA_1365	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative. (267 aa)
	SRAA_1410	NADPH:quinone reductase and related Zn-dependent oxidoreductase; Identified by MetaGeneAnnotator; putative. (330 aa)
	etf	Dehydrogenase, flavoprotein; Accepts electrons from ETF and reduces ubiquinone. (562 aa)
	gcdH1	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (395 aa)
	SRAA_1488	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)
	SRAA_1489	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (683 aa)
	scoB	Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; Identified by MetaGeneAnnotator; putative. (212 aa)
	scoA	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; Identified by MetaGeneAnnotator; putative. (234 aa)
	SRAA_1774	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (393 aa)
	SRAA_1775	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (371 aa)
	SRAA_1791	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)
	SRAA_1817	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (378 aa)
	SRAA_1818	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (395 aa)
	SRAA_1821	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (401 aa)
	SRAA_1832	acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; Identified by MetaGeneAnnotator; putative. (559 aa)
	SRAA_1885	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family. (270 aa)
	paaG-2	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
	SRAA_1887	acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; Identified by MetaGeneAnnotator; putative. (596 aa)
	fadA	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (411 aa)
	SRAA_1901	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (810 aa)
	SRAA_2285	acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; Identified by MetaGeneAnnotator; putative. (564 aa)

Your Current Organism:

Serpentinomonas raichei

NCBI taxonomy Id: 1458425
Other names: Comamonadaceae bacterium A1, Comamonadaceae bacterium H1, S. raichei, strain A1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRAA_0079	SRAA_0576	SRAA_0079	SRAA_0576	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.961
SRAA_0079	SRAA_0578	SRAA_0079	SRAA_0578	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family.	0.923
SRAA_0079	SRAA_0665	SRAA_0079	SRAA_0665	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	0.450
SRAA_0079	SRAA_0668	SRAA_0079	SRAA_0668	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family.	0.812
SRAA_0079	SRAA_1207	SRAA_0079	SRAA_1207	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.964
SRAA_0079	SRAA_1317	SRAA_0079	SRAA_1317	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	0.450
SRAA_0079	SRAA_1318	SRAA_0079	SRAA_1318	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	Electron transfer flavoprotein, alpha subunit; Identified by MetaGeneAnnotator; putative.	0.468
SRAA_0079	SRAA_1319	SRAA_0079	SRAA_1319	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	Electron transfer flavoprotein, beta subunit; Identified by MetaGeneAnnotator; putative.	0.545
SRAA_0079	SRAA_1365	SRAA_0079	SRAA_1365	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative.	0.956
SRAA_0079	SRAA_1488	SRAA_0079	SRAA_1488	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.639
SRAA_0079	SRAA_1774	SRAA_0079	SRAA_1774	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	0.514
SRAA_0079	SRAA_1775	SRAA_0079	SRAA_1775	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	0.573
SRAA_0079	SRAA_1791	SRAA_0079	SRAA_1791	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.965
SRAA_0079	SRAA_1817	SRAA_0079	SRAA_1817	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	0.765
SRAA_0079	SRAA_1818	SRAA_0079	SRAA_1818	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.960
SRAA_0079	SRAA_1821	SRAA_0079	SRAA_1821	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	0.641
SRAA_0079	SRAA_1885	SRAA_0079	SRAA_1885	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family.	0.896
SRAA_0079	atoB	SRAA_0079	SRAA_0593	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.965
SRAA_0079	etf	SRAA_0079	SRAA_1416	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	Dehydrogenase, flavoprotein; Accepts electrons from ETF and reduces ubiquinone.	0.553
SRAA_0079	fadA	SRAA_0079	SRAA_1900	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.676