18 items (Serpentinomonas raichei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SRAA_0079	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (283 aa)
	SRAA_0576	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (420 aa)
	SRAA_0668	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
	SRAA_1207	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	SRAA_1208	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family. (704 aa)
	SRAA_1365	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative. (267 aa)
	gcdH1	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (395 aa)
	SRAA_1488	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)
	SRAA_1489	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (683 aa)
	SRAA_1774	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (393 aa)
	SRAA_1775	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (371 aa)
	SRAA_1791	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)
	SRAA_1817	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (378 aa)
	SRAA_1818	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (395 aa)
	SRAA_1885	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family. (270 aa)
	paaG-2	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
	fadA	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (411 aa)
	SRAA_1901	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (810 aa)

Your Current Organism:

Serpentinomonas raichei

NCBI taxonomy Id: 1458425
Other names: Comamonadaceae bacterium A1, Comamonadaceae bacterium H1, S. raichei, strain A1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRAA_0079	SRAA_0576	SRAA_0079	SRAA_0576	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.961
SRAA_0079	SRAA_0668	SRAA_0079	SRAA_0668	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family.	0.812
SRAA_0079	SRAA_1207	SRAA_0079	SRAA_1207	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.964
SRAA_0079	SRAA_1365	SRAA_0079	SRAA_1365	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative.	0.956
SRAA_0079	SRAA_1488	SRAA_0079	SRAA_1488	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.639
SRAA_0079	SRAA_1774	SRAA_0079	SRAA_1774	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	0.514
SRAA_0079	SRAA_1775	SRAA_0079	SRAA_1775	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	0.573
SRAA_0079	SRAA_1791	SRAA_0079	SRAA_1791	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.965
SRAA_0079	SRAA_1817	SRAA_0079	SRAA_1817	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	0.765
SRAA_0079	SRAA_1818	SRAA_0079	SRAA_1818	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.960
SRAA_0079	SRAA_1885	SRAA_0079	SRAA_1885	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family.	0.896
SRAA_0079	fadA	SRAA_0079	SRAA_1900	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.676
SRAA_0079	gcdH1	SRAA_0079	SRAA_1487	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	0.798
SRAA_0079	paaG-2	SRAA_0079	SRAA_1886	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family.	0.995
SRAA_0576	SRAA_0079	SRAA_0576	SRAA_0079	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative.	0.961
SRAA_0576	SRAA_0668	SRAA_0576	SRAA_0668	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family.	0.614
SRAA_0576	SRAA_1207	SRAA_0576	SRAA_1207	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.683
SRAA_0576	SRAA_1208	SRAA_0576	SRAA_1208	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family.	0.998
SRAA_0576	SRAA_1365	SRAA_0576	SRAA_1365	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative.	0.606
SRAA_0576	SRAA_1488	SRAA_0576	SRAA_1488	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family.	0.918