STRINGSTRING
capD capD SRAA_0124 SRAA_0124 RSp1007 RSp1007 vapC-2 vapC-2 SRAA_0127 SRAA_0127 SRAA_0128 SRAA_0128 SRAA_0129 SRAA_0129 SRAA_0130 SRAA_0130 SRAA_0133 SRAA_0133 SRAA_0134 SRAA_0134 SRAA_0135 SRAA_0135 SRAA_0136 SRAA_0136 rffA rffA SRAA_0138 SRAA_0138 SRAA_0139 SRAA_0139 SRAA_0256 SRAA_0256 SRAA_0257 SRAA_0257 SRAA_0258 SRAA_0258 rfbC rfbC SRAA_0375 SRAA_0375 SRAA_0567 SRAA_0567 SRAA_0568 SRAA_0568 rffA-2 rffA-2 SRAA_0820 SRAA_0820 SRAA_0821 SRAA_0821 SRAA_0822 SRAA_0822 SRAA_0824 SRAA_0824 SRAA_0825 SRAA_0825 SRAA_0826 SRAA_0826 SRAA_0827 SRAA_0827 SRAA_0828 SRAA_0828 SRAA_0829 SRAA_0829
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
capDPredicted nucleoside-diphosphate sugar epimerase; Identified by MetaGeneAnnotator; putative. (654 aa)
SRAA_0124Identified by MetaGeneAnnotator; putative; Belongs to the DegT/DnrJ/EryC1 family. (406 aa)
RSp1007Acetyltransferase, isoleucine patch superfamily; Identified by MetaGeneAnnotator; putative. (218 aa)
vapC-2Predicted nucleic acid-binding protein, contains PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (134 aa)
SRAA_0127Virulence-associated protein and related protein; Identified by MetaGeneAnnotator; putative. (83 aa)
SRAA_0128Sugar transferase involved in lipopolysaccharide synthesis; Identified by MetaGeneAnnotator; putative. (202 aa)
SRAA_0129Glycosyltransferase; Identified by MetaGeneAnnotator; putative. (410 aa)
SRAA_0130UDP-N-acetylglucosamine 2-epimerase; Identified by MetaGeneAnnotator; putative; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (378 aa)
SRAA_0133Nucleoside-diphosphate-sugar epimerase; Identified by MetaGeneAnnotator; putative. (377 aa)
SRAA_0134Predicted nucleoside-diphosphate sugar epimerase; Identified by MetaGeneAnnotator; putative. (314 aa)
SRAA_0135Xaa-Pro aminopeptidase; Identified by MetaGeneAnnotator; putative. (318 aa)
SRAA_0136Glycosyltransferase; Identified by MetaGeneAnnotator; putative. (440 aa)
rffADTDP-4-amino-4,6-dideoxygalactose transaminase; Identified by MetaGeneAnnotator; putative; Belongs to the DegT/DnrJ/EryC1 family. (376 aa)
SRAA_0138Acetyltransferase; Identified by MetaGeneAnnotator; putative. (210 aa)
SRAA_0139Transposase and inactivated derivatives; Identified by MetaGeneAnnotator; putative. (323 aa)
SRAA_0256dTDP-D-glucose 4,6-dehydratase; Identified by MetaGeneAnnotator; putative; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (356 aa)
SRAA_0257dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (311 aa)
SRAA_0258dTDP-glucose pyrophosphorylase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (290 aa)
rfbCdTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (189 aa)
SRAA_0375Nucleoside-diphosphate-sugar pyrophosphorylase; Identified by MetaGeneAnnotator; putative; involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon). (367 aa)
SRAA_0567Phosphomannomutase; Identified by MetaGeneAnnotator; putative. (467 aa)
SRAA_0568Glycosyltransferase; Identified by MetaGeneAnnotator; putative. (353 aa)
rffA-2DTDP-4-amino-4,6-dideoxygalactose transaminase; Identified by MetaGeneAnnotator; putative; Belongs to the DegT/DnrJ/EryC1 family. (378 aa)
SRAA_0820dTDP-D-glucose 4,6-dehydratase; Identified by MetaGeneAnnotator; putative. (324 aa)
SRAA_0821SAM-dependent methyltransferase; Identified by MetaGeneAnnotator; putative. (384 aa)
SRAA_0822SAM-dependent methyltransferase; Identified by MetaGeneAnnotator; putative. (369 aa)
SRAA_0824Sialic acid synthase; Identified by MetaGeneAnnotator; putative. (369 aa)
SRAA_0825CDP-4-dehydro-6-deoxyglucose reductase, E1; Identified by MetaGeneAnnotator; putative; Belongs to the DegT/DnrJ/EryC1 family. (537 aa)
SRAA_0826Identified by MetaGeneAnnotator; putative. (76 aa)
SRAA_0827Nucleoside-diphosphate-sugar epimerase; Identified by MetaGeneAnnotator; putative. (358 aa)
SRAA_0828Nucleoside-diphosphate-sugar pyrophosphorylase; Identified by MetaGeneAnnotator; putative; involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon). (257 aa)
SRAA_0829Glycosyltransferase involved in cell wall biogenesis; Identified by MetaGeneAnnotator; putative. (1218 aa)
Your Current Organism:
Serpentinomonas raichei
NCBI taxonomy Id: 1458425
Other names: Comamonadaceae bacterium A1, Comamonadaceae bacterium H1, S. raichei, strain A1
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