STRINGSTRING
SRAA_2192 SRAA_2192 hemL hemL argD argD glyA glyA metZ metZ serC serC gcvP gcvP gabT gabT bioA bioA bioF bioF SRAA_0053 SRAA_0053 SRAA_0124 SRAA_0124 aspC aspC ldcC ldcC SRAA_0903 SRAA_0903 SRAA_0825 SRAA_0825 SRAA_0764 SRAA_0764 degT degT SRAA_0682 SRAA_0682 iscS iscS SRAA_0534 SRAA_0534 SRAA_0432 SRAA_0432 SRAA_0412 SRAA_0412 hisC hisC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SRAA_2192Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Identified by MetaGeneAnnotator; putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (467 aa)
hemLGlutamate-1-semialdehyde aminotransferase; Identified by MetaGeneAnnotator; putative. (435 aa)
argDOrnithine/acetylornithine aminotransferase; Identified by MetaGeneAnnotator; putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (403 aa)
glyAGlycine/serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (414 aa)
metZCystathionine beta-lyase/cystathionine gamma-synthase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. (410 aa)
serCPhosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (382 aa)
gcvPGlycine cleavage system protein P (pyridoxal-binding), C-terminal domain; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (992 aa)
gabT4-aminobutyrate aminotransferase and related aminotransferase; Identified by MetaGeneAnnotator; putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (450 aa)
bioAAdenosylmethionine-8-amino-7-oxononanoate aminotransferase; Identified by MetaGeneAnnotator; putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (477 aa)
bioF7-keto-8-aminopelargonate synthetase and related enzymes; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. (408 aa)
SRAA_0053Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; Identified by MetaGeneAnnotator; putative. (384 aa)
SRAA_0124Identified by MetaGeneAnnotator; putative; Belongs to the DegT/DnrJ/EryC1 family. (406 aa)
aspCAspartate/tyrosine/aromatic aminotransferase; Identified by MetaGeneAnnotator; putative. (398 aa)
ldcCArginine/lysine/ornithine decarboxylase; Identified by MetaGeneAnnotator; putative. (764 aa)
SRAA_0903O-acetylhomoserine sulfhydrylase; Identified by MetaGeneAnnotator; putative. (433 aa)
SRAA_0825CDP-4-dehydro-6-deoxyglucose reductase, E1; Identified by MetaGeneAnnotator; putative; Belongs to the DegT/DnrJ/EryC1 family. (537 aa)
SRAA_0764Aspartate/tyrosine/aromatic aminotransferase; Identified by MetaGeneAnnotator; putative. (412 aa)
degTIdentified by MetaGeneAnnotator; putative; Belongs to the DegT/DnrJ/EryC1 family. (365 aa)
SRAA_0682Cystathionine beta-lyase/cystathionine gamma-synthase; Identified by MetaGeneAnnotator; putative. (415 aa)
iscSCysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. (404 aa)
SRAA_0534Transcriptional regulators; Containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; identified by MetaGeneAnnotator; putative. (407 aa)
SRAA_0432Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; Identified by MetaGeneAnnotator; putative. (334 aa)
SRAA_0412Aspartate/tyrosine/aromatic aminotransferase; Identified by MetaGeneAnnotator; putative. (398 aa)
hisCHistidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; Identified by MetaGeneAnnotator; putative; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (355 aa)
Your Current Organism:
Serpentinomonas raichei
NCBI taxonomy Id: 1458425
Other names: Comamonadaceae bacterium A1, Comamonadaceae bacterium H1, S. raichei, strain A1
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