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SRAA_0360 SRAA_0360 SRAA_0401 SRAA_0401 dxs dxs ispF ispF SRAA_0576 SRAA_0576 atoB atoB ispG ispG uppS uppS dxr dxr ispE ispE SRAA_1207 SRAA_1207 ispH ispH SRAA_1791 SRAA_1791 SRAA_1818 SRAA_1818 SRAA_1971 SRAA_1971
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SRAA_0360Zn-dependent protease with chaperone function; Identified by MetaGeneAnnotator; putative. (423 aa)
SRAA_0401Geranylgeranyl pyrophosphate synthase; Identified by MetaGeneAnnotator; putative; Belongs to the FPP/GGPP synthase family. (317 aa)
dxsDeoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. (631 aa)
ispF2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF). (440 aa)
SRAA_0576acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (420 aa)
atoBacetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
ispGEnzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. (420 aa)
uppSUndecaprenyl pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (251 aa)
dxr1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. (391 aa)
ispE4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (289 aa)
SRAA_1207acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
ispHPenicillin tolerance protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. (312 aa)
SRAA_1791acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)
SRAA_1818acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (395 aa)
SRAA_1971Geranylgeranyl pyrophosphate synthase; Identified by MetaGeneAnnotator; putative; Belongs to the FPP/GGPP synthase family. (338 aa)
Your Current Organism:
Serpentinomonas raichei
NCBI taxonomy Id: 1458425
Other names: Comamonadaceae bacterium A1, Comamonadaceae bacterium H1, S. raichei, strain A1
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