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SRAA_0065 SRAA_0065 SRAA_0066 SRAA_0066 SRAA_0068 SRAA_0068 SRAA_0069 SRAA_0069 SRAA_0079 SRAA_0079 ppsA ppsA cysE cysE SRAA_0538 SRAA_0538 SRAA_0576 SRAA_0576 atoB atoB phbB phbB eno eno SRAA_0670 SRAA_0670 rpiA rpiA tpiA tpiA SRAA_0760 SRAA_0760 icd icd gpmA gpmA SRAA_0862 SRAA_0862 ppc ppc pgi pgi SRAA_0930 SRAA_0930 edd edd pgl pgl zwf zwf glk glk tal tal SRAA_0970 SRAA_0970 SRAA_0974 SRAA_0974 SRAA_0977 SRAA_0977 sucA sucA sucB sucB SRAA_0982 SRAA_0982 SRAA_1085 SRAA_1085 pdhC pdhC aceE aceE folD folD prs prs SRAA_1154 SRAA_1154 fbp1 fbp1 acs acs SRAA_1170 SRAA_1170 SRAA_1207 SRAA_1207 SRAA_1208 SRAA_1208 iolA iolA accA accA SRAA_1365 SRAA_1365 SRAA_1418 SRAA_1418 gcvH gcvH gcvP gcvP serC serC SRAA_1489 SRAA_1489 glyA glyA SRAA_1594 SRAA_1594 accC accC bccP bccP acnB acnB mdh mdh SRAA_1686 SRAA_1686 SRAA_1687 SRAA_1687 sdhA sdhA sdhB sdhB gltA gltA accD accD SRAA_1755 SRAA_1755 SRAA_1791 SRAA_1791 ilvA ilvA SRAA_1817 SRAA_1817 SRAA_1818 SRAA_1818 sucC sucC sucD sucD SRAA_1873 SRAA_1873 SRAA_1901 SRAA_1901 SRAA_1952 SRAA_1952 SRAA_1969 SRAA_1969 SRAA_2064 SRAA_2064 glcB glcB ackA ackA SRAA_2209 SRAA_2209 SRAA_2210 SRAA_2210 pfkA pfkA SRAA_2316 SRAA_2316 cbbL cbbL pyk pyk fbp1-2 fbp1-2 cbbP2 cbbP2 SRAA_2324 SRAA_2324 SRAA_2326 SRAA_2326 pgk pgk fbaA-2 fbaA-2 maeB maeB SRAA_2354 SRAA_2354
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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co-expression
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SRAA_0065Hypothetical protein; Identified by MetaGeneAnnotator; putative. (100 aa)
SRAA_0066Uncharacterized anaerobic dehydrogenase; Identified by MetaGeneAnnotator; putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (711 aa)
SRAA_0068NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit; Identified by MetaGeneAnnotator; putative. (523 aa)
SRAA_0069NADH:ubiquinone oxidoreductase 24 kD subunit; Identified by MetaGeneAnnotator; putative. (172 aa)
SRAA_00793-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (283 aa)
ppsAPhosphoenolpyruvate synthase/pyruvate phosphate dikinase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. (797 aa)
cysESerine acetyltransferase; Identified by MetaGeneAnnotator; putative. (255 aa)
SRAA_0538Phosphoserine phosphatase; Identified by MetaGeneAnnotator; putative. (242 aa)
SRAA_0576acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (420 aa)
atoBacetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
phbBDehydrogenase with different specificities related to short-chain alcohol dehydrogenase; Identified by MetaGeneAnnotator; putative; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (245 aa)
enoEnolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (427 aa)
SRAA_0670Phosphoglycerate dehydrogenase and related dehydrogenase; Identified by MetaGeneAnnotator; putative; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (335 aa)
rpiARibose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (223 aa)
tpiATriosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (253 aa)
SRAA_0760Glutamate dehydrogenase/leucine dehydrogenase; Identified by MetaGeneAnnotator; putative; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (441 aa)
icdIsocitrate dehydrogenase; Identified by MetaGeneAnnotator; putative. (417 aa)
gpmAPhosphoglycerate mutase 1; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (247 aa)
SRAA_0862Isocitrate lyase; Identified by MetaGeneAnnotator; putative. (443 aa)
ppcPhosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. (918 aa)
pgiGlucose-6-phosphate isomerase; Identified by MetaGeneAnnotator; putative; Belongs to the GPI family. (544 aa)
SRAA_09302-keto-3-deoxy-6-phosphogluconate aldolase; Identified by MetaGeneAnnotator; putative. (237 aa)
eddDihydroxyacid dehydratase/phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (612 aa)
pgl6-phosphogluconolactonase/Glucosamine-6- phosphate isomerase/deaminase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. (272 aa)
zwfGlucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. (487 aa)
glkGlucokinase; Identified by MetaGeneAnnotator; putative; Belongs to the bacterial glucokinase family. (333 aa)
talTransaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. (319 aa)
SRAA_0970methylmalonyl-CoA mutase, N-terminal domain/subunit; Identified by MetaGeneAnnotator; putative. (715 aa)
SRAA_0974acetyl-CoA carboxylase, carboxyltransferase component, subunits alpha and beta; Identified by MetaGeneAnnotator; putative. (510 aa)
SRAA_0977acetyl/propionyl-CoA carboxylase, alpha subunit; Identified by MetaGeneAnnotator; putative. (697 aa)
sucA2-oxoglutarate dehydrogenase complex, dehydrogenase E1 component, and related enzymes; Identified by MetaGeneAnnotator; putative. (959 aa)
sucBDihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (420 aa)
SRAA_0982Dihydrolipoyl dehydrogenase; Identified by MetaGeneAnnotator; putative. (479 aa)
SRAA_1085Dihydrolipoyl dehydrogenase; Identified by MetaGeneAnnotator; putative. (611 aa)
pdhCAcetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (442 aa)
aceEPyruvate dehydrogenase complex, dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (905 aa)
folD5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (286 aa)
prsPhosphoribosylpyrophosphate synthetase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (327 aa)
SRAA_1154Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; Identified by MetaGeneAnnotator; putative. (619 aa)
fbp1Fructose-1,6-bisphosphatase; Identified by MetaGeneAnnotator; putative; Belongs to the FBPase class 1 family. (353 aa)
acsAcyl-coenzyme A synthetase/AMP-(fatty) acid ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (664 aa)
SRAA_1170Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (516 aa)
SRAA_1207acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
SRAA_12083-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative; Belongs to the enoyl-CoA hydratase/isomerase family. (704 aa)
iolANAD-dependent aldehyde dehydrogenase; Identified by MetaGeneAnnotator; putative. (500 aa)
accAacetyl-CoA carboxylase alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (336 aa)
SRAA_1365enoyl-CoA hydratase/carnithine racemase; Identified by MetaGeneAnnotator; putative. (267 aa)
SRAA_1418Glycine cleavage system T protein; Aminomethyltransferase; identified by MetaGeneAnnotator; putative. (394 aa)
gcvHGlycine cleavage system H protein (lipoate-binding); The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (121 aa)
gcvPGlycine cleavage system protein P (pyridoxal-binding), C-terminal domain; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (992 aa)
serCPhosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (382 aa)
SRAA_14893-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (683 aa)
glyAGlycine/serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (414 aa)
SRAA_1594Alcohol dehydrogenase, class IV; Identified by MetaGeneAnnotator; putative. (383 aa)
accCBiotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (449 aa)
bccPBiotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (157 aa)
acnBIdentified by MetaGeneAnnotator; putative; Belongs to the aconitase/IPM isomerase family. (863 aa)
mdhMalate/lactate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family. (328 aa)
SRAA_1686Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; Identified by MetaGeneAnnotator; putative. (144 aa)
SRAA_1687Succinate dehydrogenase, hydrophobic anchor subunit; Identified by MetaGeneAnnotator; putative. (121 aa)
sdhASuccinate dehydrogenase/fumarate reductase, flavoprotein subunit; Identified by MetaGeneAnnotator; putative; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (603 aa)
sdhBSuccinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Identified by MetaGeneAnnotator; putative. (234 aa)
gltACitrate synthase; Identified by MetaGeneAnnotator; putative; Belongs to the citrate synthase family. (436 aa)
accDacetyl-CoA carboxylase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (292 aa)
SRAA_1755Fructose-2,6-bisphosphatase; Identified by MetaGeneAnnotator; putative. (212 aa)
SRAA_1791acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)
ilvAThreonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (525 aa)
SRAA_1817acyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (378 aa)
SRAA_1818acetyl-CoA acetyltransferase; Identified by MetaGeneAnnotator; putative; Belongs to the thiolase-like superfamily. Thiolase family. (395 aa)
sucCsuccinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (391 aa)
sucDsuccinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (297 aa)
SRAA_1873Isocitrate/isopropylmalate dehydrogenase; Identified by MetaGeneAnnotator; putative. (490 aa)
SRAA_19013-hydroxyacyl-CoA dehydrogenase; Identified by MetaGeneAnnotator; putative. (810 aa)
SRAA_1952Putative glycerate kinase; Identified by MetaGeneAnnotator; putative. (441 aa)
SRAA_19695,10-methylenetetrahydrofolate reductase; Identified by MetaGeneAnnotator; putative; Belongs to the methylenetetrahydrofolate reductase family. (281 aa)
SRAA_2064Pentose-5-phosphate-3-epimerase; Identified by MetaGeneAnnotator; putative; Belongs to the ribulose-phosphate 3-epimerase family. (228 aa)
glcBMalate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. (741 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (408 aa)
SRAA_2209Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; Identified by MetaGeneAnnotator; putative. (545 aa)
SRAA_2210Phosphotransacetylase; Identified by MetaGeneAnnotator; putative. (496 aa)
pfkA6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily. (371 aa)
SRAA_2316Ribulose bisphosphate carboxylase small subunit; Identified by MetaGeneAnnotator; putative. (108 aa)
cbbLRibulose 1,5-bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (473 aa)
pykPyruvate kinase; Identified by MetaGeneAnnotator; putative; Belongs to the pyruvate kinase family. (476 aa)
fbp1-2Fructose-1,6-bisphosphatase; Identified by MetaGeneAnnotator; putative; Belongs to the FBPase class 1 family. (364 aa)
cbbP2Phosphoribulokinase; Identified by MetaGeneAnnotator; putative. (294 aa)
SRAA_2324Transketolase; Identified by MetaGeneAnnotator; putative; Belongs to the transketolase family. (676 aa)
SRAA_2326Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Identified by MetaGeneAnnotator; putative; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (335 aa)
pgk3-phosphoglycerate kinase; Identified by MetaGeneAnnotator; putative; Belongs to the phosphoglycerate kinase family. (446 aa)
fbaA-2Fructose/tagatose bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. (355 aa)
maeBMalic enzyme; Identified by MetaGeneAnnotator; putative. (798 aa)
SRAA_2354Phosphotransacetylase; Identified by MetaGeneAnnotator; putative. (477 aa)
Your Current Organism:
Serpentinomonas raichei
NCBI taxonomy Id: 1458425
Other names: Comamonadaceae bacterium A1, Comamonadaceae bacterium H1, S. raichei, strain A1
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