(17 nodes) Mixed, incl. Phosphate ion transport, and Thymidylate kinase network (Nitrososphaera evergladensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NTE_00041	Phosphate uptake regulator; PFAM: Antidote-toxin recognition MazE; PhoU domain. (365 aa)
	NTE_00042	Phosphate uptake regulator; Plays a role in the regulation of phosphate uptake. (222 aa)
	pstB	Phosphate ABC transporter ATP-binding protein, PhoT family; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (276 aa)
	NTE_00044	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA. (302 aa)
	NTE_00045	Phosphate ABC transporter membrane protein 1, PhoT family; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (336 aa)
	NTE_00046	PFAM: PBP superfamily domain; TIGRFAM: phosphate ABC transporter, phosphate-binding protein. (514 aa)
	NTE_00047	Hypothetical protein. (71 aa)
	NTE_00048	Hypothetical protein. (83 aa)
	NTE_00049	Phosphohistidine phosphatase, SixA; PFAM: Histidine phosphatase superfamily (branch 1); TIGRFAM: phosphohistidine phosphatase SixA. (186 aa)
	NTE_00050	Exopolyphosphatase; PFAM: Ppx/GppA phosphatase family. (521 aa)
	tmk	PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase. (245 aa)
	tmk-2	PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase. (249 aa)
	NTE_00053	Hypothetical protein; PFAM: CHAD domain. (279 aa)
	NTE_00439	PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region. (179 aa)
	NTE_00470	Polyphosphate:AMP phosphotransferase; PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate:nucleotide phosphotransferase, PPK2 family. (303 aa)
	tmk-3	PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase. (198 aa)
	NTE_03095	ABC-type phosphate transport system, periplasmic component. (446 aa)

Your Current Organism:

Nitrososphaera evergladensis

NCBI taxonomy Id: 1459636
Other names: C. Nitrososphaera evergladensis SR1, Candidatus Nitrososphaera evergladensis SR1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NTE_00041	NTE_00042	NTE_00041	NTE_00042	Phosphate uptake regulator; PFAM: Antidote-toxin recognition MazE; PhoU domain.	Phosphate uptake regulator; Plays a role in the regulation of phosphate uptake.	0.627
NTE_00041	NTE_00044	NTE_00041	NTE_00044	Phosphate uptake regulator; PFAM: Antidote-toxin recognition MazE; PhoU domain.	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA.	0.830
NTE_00041	NTE_00045	NTE_00041	NTE_00045	Phosphate uptake regulator; PFAM: Antidote-toxin recognition MazE; PhoU domain.	Phosphate ABC transporter membrane protein 1, PhoT family; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.479
NTE_00041	NTE_00046	NTE_00041	NTE_00046	Phosphate uptake regulator; PFAM: Antidote-toxin recognition MazE; PhoU domain.	PFAM: PBP superfamily domain; TIGRFAM: phosphate ABC transporter, phosphate-binding protein.	0.636
NTE_00041	NTE_03095	NTE_00041	NTE_03095	Phosphate uptake regulator; PFAM: Antidote-toxin recognition MazE; PhoU domain.	ABC-type phosphate transport system, periplasmic component.	0.543
NTE_00041	pstB	NTE_00041	NTE_00043	Phosphate uptake regulator; PFAM: Antidote-toxin recognition MazE; PhoU domain.	Phosphate ABC transporter ATP-binding protein, PhoT family; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.870
NTE_00042	NTE_00041	NTE_00042	NTE_00041	Phosphate uptake regulator; Plays a role in the regulation of phosphate uptake.	Phosphate uptake regulator; PFAM: Antidote-toxin recognition MazE; PhoU domain.	0.627
NTE_00042	NTE_00044	NTE_00042	NTE_00044	Phosphate uptake regulator; Plays a role in the regulation of phosphate uptake.	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA.	0.960
NTE_00042	NTE_00045	NTE_00042	NTE_00045	Phosphate uptake regulator; Plays a role in the regulation of phosphate uptake.	Phosphate ABC transporter membrane protein 1, PhoT family; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.869
NTE_00042	NTE_00046	NTE_00042	NTE_00046	Phosphate uptake regulator; Plays a role in the regulation of phosphate uptake.	PFAM: PBP superfamily domain; TIGRFAM: phosphate ABC transporter, phosphate-binding protein.	0.733
NTE_00042	NTE_03095	NTE_00042	NTE_03095	Phosphate uptake regulator; Plays a role in the regulation of phosphate uptake.	ABC-type phosphate transport system, periplasmic component.	0.584
NTE_00042	pstB	NTE_00042	NTE_00043	Phosphate uptake regulator; Plays a role in the regulation of phosphate uptake.	Phosphate ABC transporter ATP-binding protein, PhoT family; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.976
NTE_00044	NTE_00041	NTE_00044	NTE_00041	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA.	Phosphate uptake regulator; PFAM: Antidote-toxin recognition MazE; PhoU domain.	0.830
NTE_00044	NTE_00042	NTE_00044	NTE_00042	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA.	Phosphate uptake regulator; Plays a role in the regulation of phosphate uptake.	0.960
NTE_00044	NTE_00045	NTE_00044	NTE_00045	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA.	Phosphate ABC transporter membrane protein 1, PhoT family; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.999
NTE_00044	NTE_00046	NTE_00044	NTE_00046	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA.	PFAM: PBP superfamily domain; TIGRFAM: phosphate ABC transporter, phosphate-binding protein.	0.999
NTE_00044	NTE_00049	NTE_00044	NTE_00049	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA.	Phosphohistidine phosphatase, SixA; PFAM: Histidine phosphatase superfamily (branch 1); TIGRFAM: phosphohistidine phosphatase SixA.	0.453
NTE_00044	NTE_00050	NTE_00044	NTE_00050	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA.	Exopolyphosphatase; PFAM: Ppx/GppA phosphatase family.	0.586
NTE_00044	NTE_03095	NTE_00044	NTE_03095	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA.	ABC-type phosphate transport system, periplasmic component.	0.994
NTE_00044	pstB	NTE_00044	NTE_00043	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA.	Phosphate ABC transporter ATP-binding protein, PhoT family; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.999