STRINGSTRING
rpl12 rpl12 NTE_00747 NTE_00747 NTE_00784 NTE_00784 rpl21e rpl21e rps28e rps28e rpl7ae rpl7ae NTE_01335 NTE_01335 NTE_01337 NTE_01337 NTE_01345 NTE_01345 rpl19e rpl19e rps15 rps15 rps8 rps8 rps14 rps14 rps4e rps4e rpl24 rpl24 rpl22 rpl22 NTE_01923 NTE_01923 NTE_02195 NTE_02195 NTE_02376 NTE_02376 rpl31e rpl31e NTE_02748 NTE_02748 NTE_02797 NTE_02797 rps19e rps19e rpl44e rpl44e
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl12LSU ribosomal protein L12AE; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (103 aa)
NTE_00747LSU ribosomal protein L15E; PFAM: Ribosomal L15. (152 aa)
NTE_00784PFAM: Ribosomal protein S24e. (126 aa)
rpl21ePFAM: Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family. (99 aa)
rps28ePFAM: Ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family. (72 aa)
rpl7aeLSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (127 aa)
NTE_01335PFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family. (155 aa)
NTE_01337PFAM: Ribosomal protein L18e/L15. (116 aa)
NTE_01345PFAM: Ribosomal L37ae protein family. (77 aa)
rpl19eRibosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (149 aa)
rps15SSU ribosomal protein S15P; PFAM: Ribosomal S13/S15 N-terminal domain; Ribosomal protein S15. (157 aa)
rps8SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)
rps14Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles. (59 aa)
rps4ePFAM: S4 domain; Ribosomal family S4e; RS4NT (NUC023) domain; Belongs to the eukaryotic ribosomal protein eS4 family. (237 aa)
rpl24Ribosomal protein L24p/L26e, archaeal/eukaryotic; Located at the polypeptide exit tunnel on the outside of the subunit. (149 aa)
rpl22LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (157 aa)
NTE_01923PFAM: Ribosomal protein S26e. (100 aa)
NTE_02195Ribosomal protein S25. (121 aa)
NTE_02376Ribosomal protein S17E; PFAM: Ribosomal S17. (83 aa)
rpl31ePFAM: Ribosomal protein L31e; Belongs to the ribosomal protein L31e family. (126 aa)
NTE_02748PFAM: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family. (104 aa)
NTE_02797PFAM: Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, N-terminal domain; TIGRFAM: ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type); Belongs to the universal ribosomal protein uS5 family. (206 aa)
rps19eSSU ribosomal protein S19E; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (151 aa)
rpl44eLSU ribosomal protein L44E; Binds to the 23S rRNA. (90 aa)
Your Current Organism:
Nitrososphaera evergladensis
NCBI taxonomy Id: 1459636
Other names: C. Nitrososphaera evergladensis SR1, Candidatus Nitrososphaera evergladensis SR1
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