(6 nodes) Antiporter activity, and Proton-conducting membrane transporter network (Thermosipho sp. 1063)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APT72578.1	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
	APT72579.1	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (85 aa)
	APT72580.1	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)
	APT72582.1	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	APT72583.1	Subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
	APT72584.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)

Your Current Organism:

Thermosipho sp. 1063

NCBI taxonomy Id: 1462747
Other names: T. sp. 1063

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APT72578.1	APT72579.1	BG95_06850	BG95_06855	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
APT72578.1	APT72580.1	BG95_06850	BG95_06860	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
APT72578.1	APT72582.1	BG95_06850	BG95_06870	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APT72578.1	APT72583.1	BG95_06850	BG95_06875	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
APT72578.1	APT72584.1	BG95_06850	BG95_06880	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
APT72579.1	APT72578.1	BG95_06855	BG95_06850	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
APT72579.1	APT72580.1	BG95_06855	BG95_06860	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
APT72579.1	APT72582.1	BG95_06855	BG95_06870	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
APT72579.1	APT72583.1	BG95_06855	BG95_06875	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
APT72579.1	APT72584.1	BG95_06855	BG95_06880	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
APT72580.1	APT72578.1	BG95_06860	BG95_06850	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
APT72580.1	APT72579.1	BG95_06860	BG95_06855	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
APT72580.1	APT72582.1	BG95_06860	BG95_06870	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
APT72580.1	APT72583.1	BG95_06860	BG95_06875	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APT72580.1	APT72584.1	BG95_06860	BG95_06880	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
APT72582.1	APT72578.1	BG95_06870	BG95_06850	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APT72582.1	APT72579.1	BG95_06870	BG95_06855	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
APT72582.1	APT72580.1	BG95_06870	BG95_06860	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
APT72582.1	APT72583.1	BG95_06870	BG95_06875	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
APT72582.1	APT72584.1	BG95_06870	BG95_06880	Cation:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991