39 items (Paraburkholderia ginsengiterrae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A6V36_20205	Histidine kinase. (1427 aa)
	A6V36_01510	PAS domain-containing sensor histidine kinase. (804 aa)
	A6V36_03310	Phosphate regulon sensor histidine kinase PhoR. (437 aa)
	A6V36_06330	Diguanylate cyclase. (604 aa)
	A6V36_07115	Helix-turn-helix transcriptional regulator. (392 aa)
	A6V36_08415	Uncharacterized protein. (512 aa)
	A6V36_08905	Histidine kinase. (857 aa)
	A6V36_09595	Propionate catabolism operon regulatory protein PrpR. (654 aa)
	A6V36_09790	Histidine kinase. (1841 aa)
	A6V36_10460	Sigma-54-dependent Fis family transcriptional regulator. (492 aa)
	A6V36_10550	Chemotaxis protein. (566 aa)
	A6V36_10830	Diguanylate cyclase. (312 aa)
	A6V36_11670	Uncharacterized protein. (1046 aa)
	A6V36_14950	Diguanylate phosphodiesterase. (565 aa)
	A6V36_15565	Transcriptional regulator. (270 aa)
	A6V36_17125	Hybrid sensor histidine kinase/response regulator. (776 aa)
	A6V36_18035	Uncharacterized protein. (548 aa)
	A6V36_19630	Uncharacterized protein. (510 aa)
	A6V36_20375	Diguanylate cyclase. (1037 aa)
	A6V36_21030	Histidine kinase. (539 aa)
	A6V36_21975	RNase II stability modulator. (667 aa)
	A6V36_22155	Propionate catabolism operon regulatory protein PrpR. (665 aa)
	A6V36_22405	Histidine kinase. (951 aa)
	A6V36_23505	LuxR family transcriptional regulator. (200 aa)
	A6V36_24880	Helix-turn-helix transcriptional regulator. (181 aa)
	A6V36_25205	Histidine kinase. (143 aa)
	A6V36_27835	Uncharacterized protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (1147 aa)
	A6V36_27980	Hybrid sensor histidine kinase/response regulator. (657 aa)
	A6V36_28260	Helix-turn-helix transcriptional regulator. (394 aa)
	A6V36_28605	Histidine kinase. (377 aa)
	A6V36_28770	Histidine kinase. (465 aa)
	A6V36_28820	Histidine kinase. (366 aa)
	A6V36_29870	Hybrid sensor histidine kinase/response regulator. (651 aa)
	A6V36_30320	Uncharacterized protein. (528 aa)
	A6V36_30735	PAS domain-containing sensor histidine kinase. (380 aa)
	A6V36_30810	PAS domain-containing sensor histidine kinase. (838 aa)
	A6V36_31495	Diguanylate phosphodiesterase. (1036 aa)
	A6V36_34120	Diguanylate cyclase. (769 aa)
	A6V36_36470	Sigma-54-dependent Fis family transcriptional regulator. (673 aa)

Your Current Organism:

Paraburkholderia ginsengiterrae

NCBI taxonomy Id: 1462993
Other names: Burkholderia ginsengiterrae, Burkholderia ginsengiterrae Farh et al. 2015, Burkholderia panaciterrae, Burkholderia panaciterrae Farh et al. 2015, Burkholderia sp. DCY85, Burkholderia sp. DCY85-1, JCM 19888, JCM 19889 [[Paraburkholderia panaciterrae]], KCTC 42054, KCTC 42055 [[Paraburkholderia panaciterrae]], P. ginsengiterrae, Paraburkholderia ginsengiterrae (Farh et al. 2015) Dobritsa and Samadpour 2016 emend. Dobritsa et al. 2016, Paraburkholderia panaciterrae, Paraburkholderia panaciterrae (Farh et al. 2015) Dobritsa and Samadpour 2016, strain DCY85, strain DCY85-1 [[Paraburkholderia panaciterrae]]

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A6V36_01510	A6V36_08905	PAS domain-containing sensor histidine kinase.	Histidine kinase.	0.806
A6V36_01510	A6V36_10550	PAS domain-containing sensor histidine kinase.	Chemotaxis protein.	0.550
A6V36_01510	A6V36_11670	PAS domain-containing sensor histidine kinase.	Uncharacterized protein.	0.501
A6V36_01510	A6V36_14950	PAS domain-containing sensor histidine kinase.	Diguanylate phosphodiesterase.	0.651
A6V36_01510	A6V36_17125	PAS domain-containing sensor histidine kinase.	Hybrid sensor histidine kinase/response regulator.	0.854
A6V36_01510	A6V36_19630	PAS domain-containing sensor histidine kinase.	Uncharacterized protein.	0.807
A6V36_01510	A6V36_20205	PAS domain-containing sensor histidine kinase.	Histidine kinase.	0.841
A6V36_01510	A6V36_20375	PAS domain-containing sensor histidine kinase.	Diguanylate cyclase.	0.501
A6V36_01510	A6V36_21030	PAS domain-containing sensor histidine kinase.	Histidine kinase.	0.812
A6V36_01510	A6V36_21975	PAS domain-containing sensor histidine kinase.	RNase II stability modulator.	0.501
A6V36_01510	A6V36_22405	PAS domain-containing sensor histidine kinase.	Histidine kinase.	0.944
A6V36_01510	A6V36_27835	PAS domain-containing sensor histidine kinase.	Uncharacterized protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	0.932
A6V36_01510	A6V36_27980	PAS domain-containing sensor histidine kinase.	Hybrid sensor histidine kinase/response regulator.	0.671
A6V36_01510	A6V36_28770	PAS domain-containing sensor histidine kinase.	Histidine kinase.	0.510
A6V36_01510	A6V36_28820	PAS domain-containing sensor histidine kinase.	Histidine kinase.	0.556
A6V36_01510	A6V36_29870	PAS domain-containing sensor histidine kinase.	Hybrid sensor histidine kinase/response regulator.	0.789
A6V36_01510	A6V36_30735	PAS domain-containing sensor histidine kinase.	PAS domain-containing sensor histidine kinase.	0.636
A6V36_01510	A6V36_30810	PAS domain-containing sensor histidine kinase.	PAS domain-containing sensor histidine kinase.	0.637
A6V36_01510	A6V36_31495	PAS domain-containing sensor histidine kinase.	Diguanylate phosphodiesterase.	0.511
A6V36_01510	A6V36_34120	PAS domain-containing sensor histidine kinase.	Diguanylate cyclase.	0.536

page 1 of 42

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About