(6 nodes) Pentose phosphate pathway network (Prochlorococcus marinus AS9601)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tal	Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. (341 aa)
	rpe	COG36 Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Belongs to the ribulose-phosphate 3-epimerase family. (251 aa)
	glpX	Fructose-1,6-bisphosphatase/sedoheptulose-1, 7-bis phosphatase; Catalyzes the hydrolysis of fructose 1,6-bisphosphate (Fru 1,6-P2) and sedoheptulose 1,7-bisphosphate (Sed 1,7-P2) to fructose 6- phosphate and sedoheptulose 7-phosphate, respectively; Belongs to the FBPase class 2 family. (333 aa)
	ABM70737.1	COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]. (288 aa)
	ABM70738.1	COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]. (304 aa)
	tktA	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. (668 aa)

Your Current Organism:

Prochlorococcus marinus AS9601

NCBI taxonomy Id: 146891
Other names: P. marinus str. AS9601, Prochlorococcus marinus str. AS9601, Prochlorococcus sp. AS9601

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABM70737.1	ABM70738.1	A9601_14541	A9601_14551	COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism].	COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	0.999
ABM70737.1	glpX	A9601_14541	A9601_08291	COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism].	Fructose-1,6-bisphosphatase/sedoheptulose-1, 7-bis phosphatase; Catalyzes the hydrolysis of fructose 1,6-bisphosphate (Fru 1,6-P2) and sedoheptulose 1,7-bisphosphate (Sed 1,7-P2) to fructose 6- phosphate and sedoheptulose 7-phosphate, respectively; Belongs to the FBPase class 2 family.	0.912
ABM70737.1	rpe	A9601_14541	A9601_08281	COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism].	COG36 Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Belongs to the ribulose-phosphate 3-epimerase family.	0.986
ABM70737.1	tal	A9601_14541	A9601_05751	COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism].	Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.	0.924
ABM70737.1	tktA	A9601_14541	A9601_18201	COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism].	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	0.909
ABM70738.1	ABM70737.1	A9601_14551	A9601_14541	COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism].	0.999
ABM70738.1	glpX	A9601_14551	A9601_08291	COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	Fructose-1,6-bisphosphatase/sedoheptulose-1, 7-bis phosphatase; Catalyzes the hydrolysis of fructose 1,6-bisphosphate (Fru 1,6-P2) and sedoheptulose 1,7-bisphosphate (Sed 1,7-P2) to fructose 6- phosphate and sedoheptulose 7-phosphate, respectively; Belongs to the FBPase class 2 family.	0.900
ABM70738.1	rpe	A9601_14551	A9601_08281	COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	COG36 Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Belongs to the ribulose-phosphate 3-epimerase family.	0.952
ABM70738.1	tal	A9601_14551	A9601_05751	COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.	0.923
ABM70738.1	tktA	A9601_14551	A9601_18201	COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	0.930
glpX	ABM70737.1	A9601_08291	A9601_14541	Fructose-1,6-bisphosphatase/sedoheptulose-1, 7-bis phosphatase; Catalyzes the hydrolysis of fructose 1,6-bisphosphate (Fru 1,6-P2) and sedoheptulose 1,7-bisphosphate (Sed 1,7-P2) to fructose 6- phosphate and sedoheptulose 7-phosphate, respectively; Belongs to the FBPase class 2 family.	COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism].	0.912
glpX	ABM70738.1	A9601_08291	A9601_14551	Fructose-1,6-bisphosphatase/sedoheptulose-1, 7-bis phosphatase; Catalyzes the hydrolysis of fructose 1,6-bisphosphate (Fru 1,6-P2) and sedoheptulose 1,7-bisphosphate (Sed 1,7-P2) to fructose 6- phosphate and sedoheptulose 7-phosphate, respectively; Belongs to the FBPase class 2 family.	COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	0.900
glpX	rpe	A9601_08291	A9601_08281	Fructose-1,6-bisphosphatase/sedoheptulose-1, 7-bis phosphatase; Catalyzes the hydrolysis of fructose 1,6-bisphosphate (Fru 1,6-P2) and sedoheptulose 1,7-bisphosphate (Sed 1,7-P2) to fructose 6- phosphate and sedoheptulose 7-phosphate, respectively; Belongs to the FBPase class 2 family.	COG36 Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Belongs to the ribulose-phosphate 3-epimerase family.	0.723
glpX	tal	A9601_08291	A9601_05751	Fructose-1,6-bisphosphatase/sedoheptulose-1, 7-bis phosphatase; Catalyzes the hydrolysis of fructose 1,6-bisphosphate (Fru 1,6-P2) and sedoheptulose 1,7-bisphosphate (Sed 1,7-P2) to fructose 6- phosphate and sedoheptulose 7-phosphate, respectively; Belongs to the FBPase class 2 family.	Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.	0.931
glpX	tktA	A9601_08291	A9601_18201	Fructose-1,6-bisphosphatase/sedoheptulose-1, 7-bis phosphatase; Catalyzes the hydrolysis of fructose 1,6-bisphosphate (Fru 1,6-P2) and sedoheptulose 1,7-bisphosphate (Sed 1,7-P2) to fructose 6- phosphate and sedoheptulose 7-phosphate, respectively; Belongs to the FBPase class 2 family.	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	0.980
rpe	ABM70737.1	A9601_08281	A9601_14541	COG36 Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Belongs to the ribulose-phosphate 3-epimerase family.	COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism].	0.986
rpe	ABM70738.1	A9601_08281	A9601_14551	COG36 Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Belongs to the ribulose-phosphate 3-epimerase family.	COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	0.952
rpe	glpX	A9601_08281	A9601_08291	COG36 Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Belongs to the ribulose-phosphate 3-epimerase family.	Fructose-1,6-bisphosphatase/sedoheptulose-1, 7-bis phosphatase; Catalyzes the hydrolysis of fructose 1,6-bisphosphate (Fru 1,6-P2) and sedoheptulose 1,7-bisphosphate (Sed 1,7-P2) to fructose 6- phosphate and sedoheptulose 7-phosphate, respectively; Belongs to the FBPase class 2 family.	0.723
rpe	tal	A9601_08281	A9601_05751	COG36 Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Belongs to the ribulose-phosphate 3-epimerase family.	Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.	0.576
rpe	tktA	A9601_08281	A9601_18201	COG36 Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Belongs to the ribulose-phosphate 3-epimerase family.	Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	0.970