(12 nodes) Mostly uncharacterized, incl. SNF2, N-terminal, and Sporulation stage II, protein P network (Paenibacillus larvae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sspI	Small acid-soluble spore protein SspI; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SspI family. (67 aa)
	AQR79602.1	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
	AQR76694.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	cwlJ	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	AQR77341.1	RsfA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	AQR77616.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
	cotE	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	AQR79827.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	ydcC	DUF4367 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
	AQR79566.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (337 aa)
	AQR79567.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	AQR79568.1	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)

Your Current Organism:

Paenibacillus larvae

NCBI taxonomy Id: 147375
Other names: P. larvae subsp. larvae, Paenibacillus larvae subsp. larvae

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQR76694.1	AQR77341.1	BXP28_04120	BXP28_08245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RsfA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
AQR76694.1	AQR77616.1	BXP28_04120	BXP28_09975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
AQR76694.1	AQR79567.1	BXP28_04120	BXP28_22455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
AQR76694.1	AQR79602.1	BXP28_04120	BXP28_02030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
AQR76694.1	AQR79827.1	BXP28_04120	BXP28_15480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
AQR76694.1	cotE	BXP28_04120	BXP28_11605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
AQR76694.1	cwlJ	BXP28_04120	BXP28_04740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
AQR76694.1	sspI	BXP28_04120	BXP28_01980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Small acid-soluble spore protein SspI; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SspI family.	0.666
AQR76694.1	ydcC	BXP28_04120	BXP28_19315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF4367 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
AQR77341.1	AQR76694.1	BXP28_08245	BXP28_04120	RsfA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
AQR77341.1	AQR77616.1	BXP28_08245	BXP28_09975	RsfA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
AQR77341.1	AQR79567.1	BXP28_08245	BXP28_22455	RsfA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AQR77341.1	AQR79568.1	BXP28_08245	BXP28_22460	RsfA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
AQR77341.1	AQR79602.1	BXP28_08245	BXP28_02030	RsfA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
AQR77341.1	AQR79827.1	BXP28_08245	BXP28_15480	RsfA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AQR77341.1	cotE	BXP28_08245	BXP28_11605	RsfA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AQR77341.1	cwlJ	BXP28_08245	BXP28_04740	RsfA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
AQR77341.1	sspI	BXP28_08245	BXP28_01980	RsfA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Small acid-soluble spore protein SspI; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SspI family.	0.764
AQR77341.1	ydcC	BXP28_08245	BXP28_19315	RsfA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF4367 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AQR77616.1	AQR76694.1	BXP28_09975	BXP28_04120	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655