(26 nodes) Cytosolic ribosome network (Opisthorchis felineus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRM22_011227	Ribosomal_L7Ae domain-containing protein. (290 aa)
	CRM22_009654	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	CRM22_008960	Ribosomal protein L37; Binds to the 23S rRNA. (89 aa)
	CRM22_008742	Uncharacterized protein. (139 aa)
	CRM22_008495	Ribos_L4_asso_C domain-containing protein. (385 aa)
	CRM22_007088	Uncharacterized protein. (165 aa)
	CRM22_005161	Uncharacterized protein. (170 aa)
	CRM22_006674	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (144 aa)
	CRM22_004985	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)
	CRM22_004909	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	CRM22_004608	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (131 aa)
	CRM22_005248	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (193 aa)
	CRM22_003626	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (87 aa)
	CRM22_003329	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (119 aa)
	CRM22_003625	Ribosomal_L7Ae domain-containing protein. (125 aa)
	CRM22_003596	Uncharacterized protein. (160 aa)
	CRM22_001515	Uncharacterized protein. (128 aa)
	CRM22_001139	Ribosomal_L18e/L15P domain-containing protein. (260 aa)
	CRM22_001899	Uncharacterized protein. (84 aa)
	CRM22_001396	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (197 aa)
	CRM22_010586	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (237 aa)
	CRM22_004799	Uncharacterized protein. (56 aa)
	CRM22_000498	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (202 aa)
	CRM22_008647	Uncharacterized protein. (246 aa)
	CRM22_007185	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (117 aa)
	CRM22_002325	Uncharacterized protein. (51 aa)

Your Current Organism:

Opisthorchis felineus

NCBI taxonomy Id: 147828
Other names: O. felineus, cat liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRM22_000498	CRM22_001139	A0A4V3SH84	A0A4S2MBY2	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Ribosomal_L18e/L15P domain-containing protein.	0.999
CRM22_000498	CRM22_001396	A0A4V3SH84	A0A4S2MF72	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
CRM22_000498	CRM22_001515	A0A4V3SH84	A0A4S2MAA7	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.999
CRM22_000498	CRM22_001899	A0A4V3SH84	A0A4S2MEH5	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.999
CRM22_000498	CRM22_002325	A0A4V3SH84	A0A4V6RH59	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.999
CRM22_000498	CRM22_003329	A0A4V3SH84	A0A4S2M1V3	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999
CRM22_000498	CRM22_003596	A0A4V3SH84	A0A4S2M5H2	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.999
CRM22_000498	CRM22_003625	A0A4V3SH84	A0A4S2M5B7	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Ribosomal_L7Ae domain-containing protein.	0.999
CRM22_000498	CRM22_003626	A0A4V3SH84	A0A4S2M0A2	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.999
CRM22_000498	CRM22_004608	A0A4V3SH84	A0A4S2LVC3	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
CRM22_000498	CRM22_004799	A0A4V3SH84	A0A4V3SF80	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.999
CRM22_000498	CRM22_004909	A0A4V3SH84	A0A4S2LTV4	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
CRM22_000498	CRM22_004985	A0A4V3SH84	A0A4S2LTC8	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.999
CRM22_000498	CRM22_005161	A0A4V3SH84	A0A4S2LSI9	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.999
CRM22_000498	CRM22_005248	A0A4V3SH84	A0A4S2LXT3	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
CRM22_000498	CRM22_006674	A0A4V3SH84	A0A4S2LSN8	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
CRM22_000498	CRM22_007088	A0A4V3SH84	A0A4S2LJN8	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.999
CRM22_000498	CRM22_007185	A0A4V3SH84	A0A4V6RGW8	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
CRM22_000498	CRM22_008495	A0A4V3SH84	A0A4S2LI53	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Ribos_L4_asso_C domain-containing protein.	0.999
CRM22_000498	CRM22_008647	A0A4V3SH84	A0A4V6RGU1	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.999