12 items (Opisthorchis felineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRM22_000249	CPSF_A domain-containing protein. (1803 aa)
	CRM22_007609	Uncharacterized protein. (703 aa)
	CRM22_009378	CID domain-containing protein. (962 aa)
	CRM22_009720	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (682 aa)
	CRM22_009268	WD_REPEATS_REGION domain-containing protein. (857 aa)
	CRM22_009858	Uncharacterized protein. (538 aa)
	CRM22_009815	Uncharacterized protein. (514 aa)
	CRM22_001906	PAP-associated domain-containing protein. (771 aa)
	CRM22_005737	Uncharacterized protein. (496 aa)
	CRM22_004997	Uncharacterized protein. (1874 aa)
	CRM22_004820	Cleavage and polyadenylation specificity factor subunit 2. (930 aa)
	CRM22_004988	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (234 aa)

Your Current Organism:

Opisthorchis felineus

NCBI taxonomy Id: 147828
Other names: O. felineus, cat liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRM22_000249	CRM22_004820	A0A4V3SHB5	A0A4S2LU96	CPSF_A domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
CRM22_000249	CRM22_004988	A0A4V3SHB5	A0A4S2LZV3	CPSF_A domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.849
CRM22_000249	CRM22_004997	A0A4V3SHB5	A0A4S2LTA5	CPSF_A domain-containing protein.	Uncharacterized protein.	0.999
CRM22_000249	CRM22_007609	A0A4V3SHB5	A0A4S2LLZ4	CPSF_A domain-containing protein.	Uncharacterized protein.	0.999
CRM22_000249	CRM22_009268	A0A4V3SHB5	A0A4S2L9L2	CPSF_A domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
CRM22_000249	CRM22_009378	A0A4V3SHB5	A0A4S2LE28	CPSF_A domain-containing protein.	CID domain-containing protein.	0.992
CRM22_000249	CRM22_009720	A0A4V3SHB5	A0A4S2LD62	CPSF_A domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.992
CRM22_000249	CRM22_009815	A0A4V3SHB5	A0A4V3SCR0	CPSF_A domain-containing protein.	Uncharacterized protein.	0.969
CRM22_001906	CRM22_004997	A0A4V3SGL5	A0A4S2LTA5	PAP-associated domain-containing protein.	Uncharacterized protein.	0.696
CRM22_001906	CRM22_009720	A0A4V3SGL5	A0A4S2LD62	PAP-associated domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.617
CRM22_004820	CRM22_000249	A0A4S2LU96	A0A4V3SHB5	Cleavage and polyadenylation specificity factor subunit 2.	CPSF_A domain-containing protein.	0.999
CRM22_004820	CRM22_004988	A0A4S2LU96	A0A4S2LZV3	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.910
CRM22_004820	CRM22_004997	A0A4S2LU96	A0A4S2LTA5	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.999
CRM22_004820	CRM22_005737	A0A4S2LU96	A0A4V3SES1	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.451
CRM22_004820	CRM22_007609	A0A4S2LU96	A0A4S2LLZ4	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.999
CRM22_004820	CRM22_009268	A0A4S2LU96	A0A4S2L9L2	Cleavage and polyadenylation specificity factor subunit 2.	WD_REPEATS_REGION domain-containing protein.	0.999
CRM22_004820	CRM22_009378	A0A4S2LU96	A0A4S2LE28	Cleavage and polyadenylation specificity factor subunit 2.	CID domain-containing protein.	0.993
CRM22_004820	CRM22_009720	A0A4S2LU96	A0A4S2LD62	Cleavage and polyadenylation specificity factor subunit 2.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.992
CRM22_004820	CRM22_009815	A0A4S2LU96	A0A4V3SCR0	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.973
CRM22_004988	CRM22_000249	A0A4S2LZV3	A0A4V3SHB5	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	CPSF_A domain-containing protein.	0.849