13 items (Opisthorchis felineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRM22_011129	Uncharacterized protein. (325 aa)
	CRM22_000249	CPSF_A domain-containing protein. (1803 aa)
	CRM22_000935	Fip1 domain-containing protein. (578 aa)
	CRM22_002159	Uncharacterized protein. (149 aa)
	CRM22_004988	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (234 aa)
	CRM22_001291	WD_REPEATS_REGION domain-containing protein. (425 aa)
	CRM22_004820	Cleavage and polyadenylation specificity factor subunit 2. (930 aa)
	CRM22_004997	Uncharacterized protein. (1874 aa)
	CRM22_006307	RRM domain-containing protein. (438 aa)
	CRM22_007609	Uncharacterized protein. (703 aa)
	CRM22_009378	CID domain-containing protein. (962 aa)
	CRM22_009268	WD_REPEATS_REGION domain-containing protein. (857 aa)
	CRM22_010298	Suf domain-containing protein. (630 aa)

Your Current Organism:

Opisthorchis felineus

NCBI taxonomy Id: 147828
Other names: O. felineus, cat liver fluke

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRM22_000249	CRM22_000935	A0A4V3SHB5	A0A4V3SH12	CPSF_A domain-containing protein.	Fip1 domain-containing protein.	0.999
CRM22_000249	CRM22_001291	A0A4V3SHB5	A0A4S2MB94	CPSF_A domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.874
CRM22_000249	CRM22_002159	A0A4V3SHB5	A0A4S2MBR6	CPSF_A domain-containing protein.	Uncharacterized protein.	0.973
CRM22_000249	CRM22_004820	A0A4V3SHB5	A0A4S2LU96	CPSF_A domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
CRM22_000249	CRM22_004988	A0A4V3SHB5	A0A4S2LZV3	CPSF_A domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.849
CRM22_000249	CRM22_004997	A0A4V3SHB5	A0A4S2LTA5	CPSF_A domain-containing protein.	Uncharacterized protein.	0.999
CRM22_000249	CRM22_006307	A0A4V3SHB5	A0A4S2LT29	CPSF_A domain-containing protein.	RRM domain-containing protein.	0.987
CRM22_000249	CRM22_007609	A0A4V3SHB5	A0A4S2LLZ4	CPSF_A domain-containing protein.	Uncharacterized protein.	0.999
CRM22_000249	CRM22_009268	A0A4V3SHB5	A0A4S2L9L2	CPSF_A domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
CRM22_000249	CRM22_009378	A0A4V3SHB5	A0A4S2LE28	CPSF_A domain-containing protein.	CID domain-containing protein.	0.992
CRM22_000249	CRM22_010298	A0A4V3SHB5	A0A4S2KZJ1	CPSF_A domain-containing protein.	Suf domain-containing protein.	0.973
CRM22_000249	CRM22_011129	A0A4V3SHB5	A0A4S2KFE4	CPSF_A domain-containing protein.	Uncharacterized protein.	0.999
CRM22_000935	CRM22_000249	A0A4V3SH12	A0A4V3SHB5	Fip1 domain-containing protein.	CPSF_A domain-containing protein.	0.999
CRM22_000935	CRM22_001291	A0A4V3SH12	A0A4S2MB94	Fip1 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.914
CRM22_000935	CRM22_002159	A0A4V3SH12	A0A4S2MBR6	Fip1 domain-containing protein.	Uncharacterized protein.	0.976
CRM22_000935	CRM22_004820	A0A4V3SH12	A0A4S2LU96	Fip1 domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
CRM22_000935	CRM22_004988	A0A4V3SH12	A0A4S2LZV3	Fip1 domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.980
CRM22_000935	CRM22_004997	A0A4V3SH12	A0A4S2LTA5	Fip1 domain-containing protein.	Uncharacterized protein.	0.999
CRM22_000935	CRM22_006307	A0A4V3SH12	A0A4S2LT29	Fip1 domain-containing protein.	RRM domain-containing protein.	0.993
CRM22_000935	CRM22_007609	A0A4V3SH12	A0A4S2LLZ4	Fip1 domain-containing protein.	Uncharacterized protein.	0.999