(42 nodes) Cytosolic ribosome network (Opisthorchis felineus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRM22_008495	Ribos_L4_asso_C domain-containing protein. (385 aa)
	CRM22_003124	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	CRM22_003625	Ribosomal_L7Ae domain-containing protein. (125 aa)
	CRM22_003596	Uncharacterized protein. (160 aa)
	CRM22_003240	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (66 aa)
	CRM22_001574	Uncharacterized protein. (185 aa)
	CRM22_001576	Uncharacterized protein. (246 aa)
	CRM22_001515	Uncharacterized protein. (128 aa)
	CRM22_001213	Ribosomal_L16 domain-containing protein. (164 aa)
	CRM22_001105	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (256 aa)
	CRM22_001100	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (122 aa)
	CRM22_000892	Ribosomal_L16 domain-containing protein. (221 aa)
	CRM22_000810	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (159 aa)
	CRM22_001396	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (197 aa)
	CRM22_007185	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (117 aa)
	CRM22_004638	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	CRM22_007314	Uncharacterized protein. (125 aa)
	CRM22_006219	S10_plectin domain-containing protein. (159 aa)
	CRM22_007592	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (180 aa)
	CRM22_006614	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (280 aa)
	CRM22_006835	Uncharacterized protein. (126 aa)
	CRM22_008552	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (144 aa)
	CRM22_004526	Uncharacterized protein. (123 aa)
	CRM22_008960	Ribosomal protein L37; Binds to the 23S rRNA. (89 aa)
	CRM22_008312	Uncharacterized protein. (686 aa)
	CRM22_008470	Uncharacterized protein. (122 aa)
	CRM22_004477	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (261 aa)
	CRM22_006273	Ribosomal_S10 domain-containing protein. (117 aa)
	CRM22_004909	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	CRM22_008876	Uncharacterized protein. (68 aa)
	CRM22_008820	TRASH domain-containing protein. (158 aa)
	CRM22_009521	Uncharacterized protein. (92 aa)
	CRM22_009654	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	CRM22_009732	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (191 aa)
	CRM22_004985	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)
	CRM22_006674	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (144 aa)
	CRM22_010961	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (291 aa)
	CRM22_011227	Ribosomal_L7Ae domain-containing protein. (290 aa)
	CRM22_011282	Ribosomal_L28e domain-containing protein. (128 aa)
	CRM22_007617	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (146 aa)
	CRM22_007861	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	CRM22_008311	Ribosomal_L19e domain-containing protein. (252 aa)

Your Current Organism:

Opisthorchis felineus

NCBI taxonomy Id: 147828
Other names: O. felineus, cat liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRM22_000810	CRM22_000892	A0A4S2MDL5	A0A4S2MD20	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribosomal_L16 domain-containing protein.	0.984
CRM22_000810	CRM22_001100	A0A4S2MDL5	A0A4S2MC43	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
CRM22_000810	CRM22_001105	A0A4S2MDL5	A0A4S2MC33	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
CRM22_000810	CRM22_001213	A0A4S2MDL5	A0A4S2MBL1	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribosomal_L16 domain-containing protein.	0.984
CRM22_000810	CRM22_001396	A0A4S2MDL5	A0A4S2MF72	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
CRM22_000810	CRM22_001515	A0A4S2MDL5	A0A4S2MAA7	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Uncharacterized protein.	0.999
CRM22_000810	CRM22_001574	A0A4S2MDL5	A0A4S2MA22	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Uncharacterized protein.	0.999
CRM22_000810	CRM22_001576	A0A4S2MDL5	A0A4S2MA78	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Uncharacterized protein.	0.999
CRM22_000810	CRM22_003124	A0A4S2MDL5	A0A4S2M3E0	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
CRM22_000810	CRM22_003240	A0A4S2MDL5	A0A4S2M8D3	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
CRM22_000810	CRM22_003596	A0A4S2MDL5	A0A4S2M5H2	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Uncharacterized protein.	0.999
CRM22_000810	CRM22_003625	A0A4S2MDL5	A0A4S2M5B7	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribosomal_L7Ae domain-containing protein.	0.999
CRM22_000810	CRM22_004477	A0A4S2MDL5	A0A4S2LVZ4	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
CRM22_000810	CRM22_004526	A0A4S2MDL5	A0A4S2LWL1	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Uncharacterized protein.	0.999
CRM22_000810	CRM22_004638	A0A4S2MDL5	A0A4S2LW42	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
CRM22_000810	CRM22_004909	A0A4S2MDL5	A0A4S2LTV4	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
CRM22_000810	CRM22_004985	A0A4S2MDL5	A0A4S2LTC8	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.999
CRM22_000810	CRM22_006219	A0A4S2MDL5	A0A4S2LM66	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	S10_plectin domain-containing protein.	0.999
CRM22_000810	CRM22_006273	A0A4S2MDL5	A0A4S2LUF8	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribosomal_S10 domain-containing protein.	0.999
CRM22_000810	CRM22_006614	A0A4S2MDL5	A0A4S2LK00	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999