(97 nodes) Ribosomal subunit network (Opisthorchis felineus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRM22_000668	Uncharacterized protein. (254 aa)
	CRM22_009654	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	CRM22_006674	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (144 aa)
	CRM22_004985	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)
	CRM22_009726	Uncharacterized protein. (251 aa)
	CRM22_004909	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	CRM22_006299	Uncharacterized protein. (135 aa)
	CRM22_006273	Ribosomal_S10 domain-containing protein. (117 aa)
	CRM22_004651	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (166 aa)
	CRM22_004643	Uncharacterized protein. (192 aa)
	CRM22_004477	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (261 aa)
	CRM22_004638	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	CRM22_004419	Uncharacterized protein. (199 aa)
	CRM22_005565	KOW domain-containing protein. (292 aa)
	CRM22_004192	Uncharacterized protein. (409 aa)
	CRM22_003850	Ribosomal_S7 domain-containing protein. (222 aa)
	CRM22_003954	Uncharacterized protein. (135 aa)
	CRM22_003568	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (217 aa)
	CRM22_003124	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	CRM22_002340	Uncharacterized protein. (170 aa)
	CRM22_003352	Uncharacterized protein. (341 aa)
	CRM22_001977	MRP-S28 domain-containing protein. (365 aa)
	CRM22_003240	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (66 aa)
	CRM22_001574	Uncharacterized protein. (185 aa)
	CRM22_001576	Uncharacterized protein. (246 aa)
	CRM22_001515	Uncharacterized protein. (128 aa)
	CRM22_009339	Uncharacterized protein. (220 aa)
	CRM22_009277	Uncharacterized protein. (172 aa)
	CRM22_009025	Uncharacterized protein. (160 aa)
	CRM22_009178	Uncharacterized protein. (227 aa)
	CRM22_009146	Ribosomal_S10 domain-containing protein. (174 aa)
	CRM22_008820	TRASH domain-containing protein. (158 aa)
	CRM22_009097	Uncharacterized protein. (638 aa)
	CRM22_002784	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (95 aa)
	CRM22_001502	Uncharacterized protein. (263 aa)
	CRM22_001306	Uncharacterized protein. (286 aa)
	CRM22_001213	Ribosomal_L16 domain-containing protein. (164 aa)
	CRM22_001105	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (256 aa)
	CRM22_001100	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (122 aa)
	CRM22_001119	Uncharacterized protein. (381 aa)
	CRM22_001027	Uncharacterized protein. (262 aa)
	CRM22_002273	TGS domain-containing protein. (373 aa)
	CRM22_000892	Ribosomal_L16 domain-containing protein. (221 aa)
	CRM22_000810	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (159 aa)
	CRM22_009732	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (191 aa)
	CRM22_001899	Uncharacterized protein. (84 aa)
	CRM22_001864	Uncharacterized protein. (101 aa)
	CRM22_001396	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (197 aa)
	CRM22_000355	Uncharacterized protein. (385 aa)
	CRM22_000257	Uncharacterized protein. (334 aa)
	CRM22_000256	Uncharacterized protein. (224 aa)
	CRM22_000186	Uncharacterized protein. (163 aa)
	CRM22_000660	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (285 aa)
	CRM22_000906	Uncharacterized protein. (125 aa)
	CRM22_011252	Uncharacterized protein. (168 aa)
	CRM22_009808	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (270 aa)
	CRM22_008199	Uncharacterized protein. (468 aa)
	CRM22_002877	Uncharacterized protein. (212 aa)
	CRM22_007185	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (117 aa)
	CRM22_006645	MRP-S23 domain-containing protein. (136 aa)
	CRM22_007592	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (180 aa)
	CRM22_006219	S10_plectin domain-containing protein. (159 aa)
	CRM22_007350	Ribosomal_S10 domain-containing protein. (203 aa)
	CRM22_005811	Uncharacterized protein. (227 aa)
	CRM22_005438	Uncharacterized protein. (513 aa)
	CRM22_006848	Uncharacterized protein. (161 aa)
	CRM22_005202	Uncharacterized protein. (151 aa)
	CRM22_006746	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (247 aa)
	CRM22_006614	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (280 aa)
	CRM22_006745	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (236 aa)
	CRM22_008006	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (505 aa)
	CRM22_008206	Uncharacterized protein. (190 aa)
	CRM22_006835	Uncharacterized protein. (126 aa)
	CRM22_008552	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (144 aa)
	CRM22_008495	Ribos_L4_asso_C domain-containing protein. (385 aa)
	CRM22_007037	Uncharacterized protein. (96 aa)
	CRM22_007106	Uncharacterized protein. (225 aa)
	CRM22_007617	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (146 aa)
	CRM22_007353	Uncharacterized protein. (194 aa)
	CRM22_007354	Uncharacterized protein. (326 aa)
	CRM22_008103	Uncharacterized protein. (134 aa)
	CRM22_007861	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	CRM22_009670	MRP-L46 domain-containing protein. (255 aa)
	CRM22_008311	Ribosomal_L19e domain-containing protein. (252 aa)
	CRM22_008312	Uncharacterized protein. (686 aa)
	CRM22_008490	L51_S25_CI-B8 domain-containing protein. (191 aa)
	CRM22_008470	Uncharacterized protein. (122 aa)
	CRM22_008534	RF_PROK_I domain-containing protein. (201 aa)
	CRM22_008876	Uncharacterized protein. (68 aa)
	CRM22_011322	Ubiquitin-like domain-containing protein. (153 aa)
	CRM22_010960	Uncharacterized protein. (193 aa)
	CRM22_010879	Uncharacterized protein. (177 aa)
	CRM22_010961	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (291 aa)
	CRM22_010951	Uncharacterized protein. (440 aa)
	CRM22_010747	Uncharacterized protein. (211 aa)
	CRM22_010746	Uncharacterized protein. (198 aa)
	CRM22_010578	Uncharacterized protein. (935 aa)

Your Current Organism:

Opisthorchis felineus

NCBI taxonomy Id: 147828
Other names: O. felineus, cat liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRM22_000186	CRM22_000256	A0A4S2MG69	A0A4S2MG39	Uncharacterized protein.	Uncharacterized protein.	0.936
CRM22_000186	CRM22_000257	A0A4S2MG69	A0A4S2MG33	Uncharacterized protein.	Uncharacterized protein.	0.936
CRM22_000186	CRM22_000355	A0A4S2MG69	A0A4S2MFC6	Uncharacterized protein.	Uncharacterized protein.	0.998
CRM22_000186	CRM22_000660	A0A4S2MG69	A0A4S2MIH2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.998
CRM22_000186	CRM22_000668	A0A4S2MG69	A0A4S2MDZ2	Uncharacterized protein.	Uncharacterized protein.	0.892
CRM22_000186	CRM22_000892	A0A4S2MG69	A0A4S2MD20	Uncharacterized protein.	Ribosomal_L16 domain-containing protein.	0.950
CRM22_000186	CRM22_000906	A0A4S2MG69	A0A4S2MJN2	Uncharacterized protein.	Uncharacterized protein.	0.999
CRM22_000186	CRM22_001027	A0A4S2MG69	A0A4S2MCI0	Uncharacterized protein.	Uncharacterized protein.	0.997
CRM22_000186	CRM22_001105	A0A4S2MG69	A0A4S2MC33	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.990
CRM22_000186	CRM22_001119	A0A4S2MG69	A0A4S2MCA2	Uncharacterized protein.	Uncharacterized protein.	0.852
CRM22_000186	CRM22_001213	A0A4S2MG69	A0A4S2MBL1	Uncharacterized protein.	Ribosomal_L16 domain-containing protein.	0.950
CRM22_000186	CRM22_001306	A0A4S2MG69	A0A4S2MBA0	Uncharacterized protein.	Uncharacterized protein.	0.926
CRM22_000186	CRM22_001396	A0A4S2MG69	A0A4S2MF72	Uncharacterized protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.991
CRM22_000186	CRM22_001502	A0A4S2MG69	A0A4S2MAI4	Uncharacterized protein.	Uncharacterized protein.	0.907
CRM22_000186	CRM22_001574	A0A4S2MG69	A0A4S2MA22	Uncharacterized protein.	Uncharacterized protein.	0.989
CRM22_000186	CRM22_001864	A0A4S2MG69	A0A4S2MF20	Uncharacterized protein.	Uncharacterized protein.	0.930
CRM22_000186	CRM22_001977	A0A4S2MG69	A0A4S2M865	Uncharacterized protein.	MRP-S28 domain-containing protein.	0.910
CRM22_000186	CRM22_002273	A0A4S2MG69	A0A4S2MCW6	Uncharacterized protein.	TGS domain-containing protein.	0.952
CRM22_000186	CRM22_002340	A0A4S2MG69	A0A4S2M6E8	Uncharacterized protein.	Uncharacterized protein.	0.944
CRM22_000186	CRM22_002784	A0A4S2MG69	A0A4S2MAF9	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999