17 items (Opisthorchis felineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRM22_008162	Uncharacterized protein. (383 aa)
	CRM22_007920	Uncharacterized protein. (1319 aa)
	CRM22_007844	Uncharacterized protein. (254 aa)
	CRM22_008656	Uncharacterized protein. (419 aa)
	CRM22_009310	Uncharacterized protein. (755 aa)
	CRM22_004753	Uncharacterized protein. (671 aa)
	CRM22_002884	Uncharacterized protein. (768 aa)
	CRM22_000723	Uncharacterized protein. (906 aa)
	CRM22_001798	Uncharacterized protein. (446 aa)
	CRM22_000683	Uncharacterized protein. (773 aa)
	CRM22_001852	Uncharacterized protein. (314 aa)
	CRM22_002157	Uncharacterized protein. (203 aa)
	CRM22_005293	C3H1-type domain-containing protein. (155 aa)
	CRM22_004785	Uncharacterized protein. (300 aa)
	CRM22_011129	Uncharacterized protein. (325 aa)
	CRM22_005504	Uncharacterized protein. (534 aa)
	CRM22_005959	Uncharacterized protein. (387 aa)

Your Current Organism:

Opisthorchis felineus

NCBI taxonomy Id: 147828
Other names: O. felineus, cat liver fluke

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRM22_000683	CRM22_002884	A0A4S2ME63	A0A4S2M3U6	Uncharacterized protein.	Uncharacterized protein.	0.505
CRM22_000683	CRM22_005293	A0A4S2ME63	A0A4S2LRS1	Uncharacterized protein.	C3H1-type domain-containing protein.	0.461
CRM22_002884	CRM22_000683	A0A4S2M3U6	A0A4S2ME63	Uncharacterized protein.	Uncharacterized protein.	0.505
CRM22_002884	CRM22_005504	A0A4S2M3U6	A0A4S2LQW4	Uncharacterized protein.	Uncharacterized protein.	0.584
CRM22_002884	CRM22_008162	A0A4S2M3U6	A0A4S2LD27	Uncharacterized protein.	Uncharacterized protein.	0.748
CRM22_005293	CRM22_000683	A0A4S2LRS1	A0A4S2ME63	C3H1-type domain-containing protein.	Uncharacterized protein.	0.461
CRM22_005504	CRM22_002884	A0A4S2LQW4	A0A4S2M3U6	Uncharacterized protein.	Uncharacterized protein.	0.584
CRM22_005504	CRM22_008162	A0A4S2LQW4	A0A4S2LD27	Uncharacterized protein.	Uncharacterized protein.	0.932
CRM22_008162	CRM22_002884	A0A4S2LD27	A0A4S2M3U6	Uncharacterized protein.	Uncharacterized protein.	0.748
CRM22_008162	CRM22_005504	A0A4S2LD27	A0A4S2LQW4	Uncharacterized protein.	Uncharacterized protein.	0.932