(84 nodes) GTP hydrolysis and joining of the 60S ribosomal subunit network (Opisthorchis felineus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRM22_006835	Uncharacterized protein. (126 aa)
	CRM22_006764	Uncharacterized protein; Belongs to the universal ribosomal protein uS3 family. (230 aa)
	CRM22_007088	Uncharacterized protein. (165 aa)
	CRM22_006614	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (280 aa)
	CRM22_006598	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	CRM22_007592	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (180 aa)
	CRM22_006219	S10_plectin domain-containing protein. (159 aa)
	CRM22_006419	KxDL domain-containing protein. (141 aa)
	CRM22_007314	Uncharacterized protein. (125 aa)
	CRM22_005241	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (420 aa)
	CRM22_005161	Uncharacterized protein. (170 aa)
	CRM22_006674	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (144 aa)
	CRM22_004985	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)
	CRM22_004909	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	CRM22_006273	Ribosomal_S10 domain-containing protein. (117 aa)
	CRM22_004608	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (131 aa)
	CRM22_004488	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (322 aa)
	CRM22_004477	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (261 aa)
	CRM22_007617	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (146 aa)
	CRM22_004638	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	CRM22_004526	Uncharacterized protein. (123 aa)
	CRM22_004345	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	CRM22_005248	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (193 aa)
	CRM22_003889	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)
	CRM22_003626	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (87 aa)
	CRM22_003329	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (119 aa)
	CRM22_004452	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	CRM22_003074	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (149 aa)
	CRM22_002995	Uncharacterized protein. (66 aa)
	CRM22_003625	Ribosomal_L7Ae domain-containing protein. (125 aa)
	CRM22_003596	Uncharacterized protein. (160 aa)
	CRM22_002402	Uncharacterized protein. (774 aa)
	CRM22_003240	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (66 aa)
	CRM22_001574	Uncharacterized protein. (185 aa)
	CRM22_001576	Uncharacterized protein. (246 aa)
	CRM22_001515	Uncharacterized protein. (128 aa)
	CRM22_001478	Ribosomal_L14e domain-containing protein. (171 aa)
	CRM22_001213	Ribosomal_L16 domain-containing protein. (164 aa)
	CRM22_001139	Ribosomal_L18e/L15P domain-containing protein. (260 aa)
	CRM22_001105	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (256 aa)
	CRM22_001100	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (122 aa)
	CRM22_000955	Uncharacterized protein. (232 aa)
	CRM22_000892	Ribosomal_L16 domain-containing protein. (221 aa)
	CRM22_000810	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (159 aa)
	CRM22_000789	Uncharacterized protein. (168 aa)
	CRM22_000673	EF-hand domain-containing protein. (1500 aa)
	CRM22_000738	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (192 aa)
	CRM22_001899	Uncharacterized protein. (84 aa)
	CRM22_001396	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (197 aa)
	CRM22_000906	Uncharacterized protein. (125 aa)
	CRM22_011252	Uncharacterized protein. (168 aa)
	CRM22_010586	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (237 aa)
	CRM22_010527	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	CRM22_004799	Uncharacterized protein. (56 aa)
	CRM22_001996	Ribosomal_L2_C domain-containing protein. (259 aa)
	CRM22_008647	Uncharacterized protein. (246 aa)
	CRM22_007185	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (117 aa)
	CRM22_002325	Uncharacterized protein. (51 aa)
	CRM22_010684	Uncharacterized protein. (410 aa)
	CRM22_010601	Ribosomal_L23eN domain-containing protein. (200 aa)
	CRM22_010578	Uncharacterized protein. (935 aa)
	CRM22_009732	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (191 aa)
	CRM22_009654	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	CRM22_009668	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (246 aa)
	CRM22_009521	Uncharacterized protein. (92 aa)
	CRM22_008852	Tr-type G domain-containing protein. (867 aa)
	CRM22_008820	TRASH domain-containing protein. (158 aa)
	CRM22_008876	Uncharacterized protein. (68 aa)
	CRM22_008470	Uncharacterized protein. (122 aa)
	CRM22_008311	Ribosomal_L19e domain-containing protein. (252 aa)
	CRM22_007861	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	CRM22_008103	Uncharacterized protein. (134 aa)
	CRM22_007616	Uncharacterized protein. (437 aa)
	CRM22_009322	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (197 aa)
	CRM22_007868	Ribosomal_L18_c domain-containing protein. (299 aa)
	CRM22_011227	Ribosomal_L7Ae domain-containing protein. (290 aa)
	CRM22_011282	Ribosomal_L28e domain-containing protein. (128 aa)
	CRM22_010961	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (291 aa)
	CRM22_010712	Uncharacterized protein. (945 aa)
	CRM22_008960	Ribosomal protein L37; Binds to the 23S rRNA. (89 aa)
	CRM22_008742	Uncharacterized protein. (139 aa)
	CRM22_008495	Ribos_L4_asso_C domain-containing protein. (385 aa)
	CRM22_006910	Uncharacterized protein. (131 aa)
	CRM22_008552	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (144 aa)

Your Current Organism:

Opisthorchis felineus

NCBI taxonomy Id: 147828
Other names: O. felineus, cat liver fluke

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRM22_000673	CRM22_000738	A0A4S2MDZ5	A0A4S2ME07	EF-hand domain-containing protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.991
CRM22_000673	CRM22_000789	A0A4S2MDZ5	A0A4S2MDR4	EF-hand domain-containing protein.	Uncharacterized protein.	0.967
CRM22_000673	CRM22_000810	A0A4S2MDZ5	A0A4S2MDL5	EF-hand domain-containing protein.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.989
CRM22_000673	CRM22_000892	A0A4S2MDZ5	A0A4S2MD20	EF-hand domain-containing protein.	Ribosomal_L16 domain-containing protein.	0.978
CRM22_000673	CRM22_000906	A0A4S2MDZ5	A0A4S2MJN2	EF-hand domain-containing protein.	Uncharacterized protein.	0.995
CRM22_000673	CRM22_000955	A0A4S2MDZ5	A0A4S2MCR6	EF-hand domain-containing protein.	Uncharacterized protein.	0.965
CRM22_000673	CRM22_001100	A0A4S2MDZ5	A0A4S2MC43	EF-hand domain-containing protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.991
CRM22_000673	CRM22_001105	A0A4S2MDZ5	A0A4S2MC33	EF-hand domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.991
CRM22_000673	CRM22_001139	A0A4S2MDZ5	A0A4S2MBY2	EF-hand domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein.	0.994
CRM22_000673	CRM22_001213	A0A4S2MDZ5	A0A4S2MBL1	EF-hand domain-containing protein.	Ribosomal_L16 domain-containing protein.	0.978
CRM22_000673	CRM22_001396	A0A4S2MDZ5	A0A4S2MF72	EF-hand domain-containing protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.963
CRM22_000673	CRM22_001478	A0A4S2MDZ5	A0A4S2MAG5	EF-hand domain-containing protein.	Ribosomal_L14e domain-containing protein.	0.996
CRM22_000673	CRM22_001515	A0A4S2MDZ5	A0A4S2MAA7	EF-hand domain-containing protein.	Uncharacterized protein.	0.995
CRM22_000673	CRM22_001574	A0A4S2MDZ5	A0A4S2MA22	EF-hand domain-containing protein.	Uncharacterized protein.	0.985
CRM22_000673	CRM22_001899	A0A4S2MDZ5	A0A4S2MEH5	EF-hand domain-containing protein.	Uncharacterized protein.	0.941
CRM22_000673	CRM22_001996	A0A4S2MDZ5	A0A4V3SGJ6	EF-hand domain-containing protein.	Ribosomal_L2_C domain-containing protein.	0.983
CRM22_000673	CRM22_002325	A0A4S2MDZ5	A0A4V6RH59	EF-hand domain-containing protein.	Uncharacterized protein.	0.994
CRM22_000673	CRM22_002402	A0A4S2MDZ5	A0A4S2M6N7	EF-hand domain-containing protein.	Uncharacterized protein.	0.941
CRM22_000673	CRM22_002995	A0A4S2MDZ5	A0A4S2M3D4	EF-hand domain-containing protein.	Uncharacterized protein.	0.983
CRM22_000673	CRM22_003074	A0A4S2MDZ5	A0A4S2M327	EF-hand domain-containing protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.983