(6 nodes) Mixed, incl. Lipase activity, and Acyl-CoA dehydrogenase N terminal network (Rhodoferax saidenbachensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW44151.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	APW44152.1	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	APW44153.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	APW44156.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
	APW44157.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (598 aa)
	APW44158.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)

Your Current Organism:

Rhodoferax saidenbachensis

NCBI taxonomy Id: 1484693
Other names: CCUG 57711, DSM 22694, R. saidenbachensis, Rhodoferax saidenbachensis Kaden et al. 2014, strain ED16

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW44151.1	APW44152.1	RS694_17535	RS694_17540	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APW44151.1	APW44153.1	RS694_17535	RS694_17545	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
APW44151.1	APW44157.1	RS694_17535	RS694_17570	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
APW44152.1	APW44151.1	RS694_17540	RS694_17535	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APW44152.1	APW44153.1	RS694_17540	RS694_17545	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
APW44152.1	APW44156.1	RS694_17540	RS694_17565	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
APW44152.1	APW44157.1	RS694_17540	RS694_17570	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
APW44153.1	APW44151.1	RS694_17545	RS694_17535	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
APW44153.1	APW44152.1	RS694_17545	RS694_17540	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
APW44153.1	APW44156.1	RS694_17545	RS694_17565	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
APW44156.1	APW44152.1	RS694_17565	RS694_17540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
APW44156.1	APW44153.1	RS694_17565	RS694_17545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
APW44156.1	APW44157.1	RS694_17565	RS694_17570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
APW44156.1	APW44158.1	RS694_17565	RS694_17575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
APW44157.1	APW44151.1	RS694_17570	RS694_17535	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
APW44157.1	APW44152.1	RS694_17570	RS694_17540	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
APW44157.1	APW44156.1	RS694_17570	RS694_17565	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
APW44157.1	APW44158.1	RS694_17570	RS694_17575	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
APW44158.1	APW44156.1	RS694_17575	RS694_17565	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
APW44158.1	APW44157.1	RS694_17575	RS694_17570	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833