(10 nodes) Mixed, incl. Cytochrome C oxidase, cbb3-type, subunit III , and Copper chaperone SCO1/SenC network (Rhodoferax saidenbachensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW41417.1	Cytochrome c5 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
	APW43958.1	Cytochrome c4; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	APW44935.1	Cysteine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
	APW44003.1	SCO family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	ctaB	Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (301 aa)
	APW44005.1	Heme A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
	APW44006.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	APW44007.1	Transmembrane cytochrome oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	APW44008.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa)
	APW44011.1	Cytochrome c oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)

Your Current Organism:

Rhodoferax saidenbachensis

NCBI taxonomy Id: 1484693
Other names: CCUG 57711, DSM 22694, R. saidenbachensis, Rhodoferax saidenbachensis Kaden et al. 2014, strain ED16

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW41417.1	APW43958.1	RS694_01850	RS694_16405	Cytochrome c5 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome c4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
APW41417.1	APW44005.1	RS694_01850	RS694_16675	Cytochrome c5 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
APW41417.1	APW44006.1	RS694_01850	RS694_16680	Cytochrome c5 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
APW43958.1	APW41417.1	RS694_16405	RS694_01850	Cytochrome c4; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome c5 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
APW43958.1	APW44003.1	RS694_16405	RS694_16665	Cytochrome c4; Derived by automated computational analysis using gene prediction method: Protein Homology.	SCO family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
APW43958.1	APW44005.1	RS694_16405	RS694_16675	Cytochrome c4; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
APW44003.1	APW43958.1	RS694_16665	RS694_16405	SCO family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome c4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
APW44003.1	APW44005.1	RS694_16665	RS694_16675	SCO family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
APW44003.1	APW44006.1	RS694_16665	RS694_16680	SCO family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
APW44003.1	APW44007.1	RS694_16665	RS694_16685	SCO family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane cytochrome oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
APW44003.1	APW44008.1	RS694_16665	RS694_16690	SCO family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
APW44003.1	APW44011.1	RS694_16665	RS694_16705	SCO family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome c oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
APW44003.1	APW44935.1	RS694_16665	RS694_16660	SCO family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
APW44003.1	ctaB	RS694_16665	RS694_16670	SCO family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.	0.934
APW44005.1	APW41417.1	RS694_16675	RS694_01850	Heme A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome c5 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
APW44005.1	APW43958.1	RS694_16675	RS694_16405	Heme A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome c4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
APW44005.1	APW44003.1	RS694_16675	RS694_16665	Heme A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	SCO family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
APW44005.1	APW44006.1	RS694_16675	RS694_16680	Heme A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
APW44005.1	APW44007.1	RS694_16675	RS694_16685	Heme A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transmembrane cytochrome oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APW44005.1	APW44008.1	RS694_16675	RS694_16690	Heme A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837