(97 nodes) GGDEF domain, and Histidine kinase-like ATPases network (Rhodoferax saidenbachensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW41143.1	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	APW41163.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
	APW41203.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	APW41239.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	APW41296.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	APW41430.1	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)
	APW44644.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (832 aa)
	APW41502.1	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (967 aa)
	APW41637.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	APW41638.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
	APW41722.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	APW41744.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	APW44673.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (566 aa)
	APW41788.1	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	APW41789.1	Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	APW41833.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	APW41861.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	APW44686.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1190 aa)
	APW44685.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	APW41932.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
	APW41976.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	APW42031.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (890 aa)
	APW42134.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)
	APW42137.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	APW42158.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
	APW44724.1	REC domain-containing phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (571 aa)
	APW42162.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (881 aa)
	APW42275.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)
	APW42276.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	APW42307.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (543 aa)
	APW42369.1	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (600 aa)
	APW42399.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (650 aa)
	APW42400.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	APW42428.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (266 aa)
	APW42429.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	APW42435.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1297 aa)
	APW42440.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1026 aa)
	APW42457.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	APW42476.1	EAL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (536 aa)
	APW42483.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
	APW42534.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (836 aa)
	APW42546.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	APW42676.1	Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	APW42677.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (686 aa)
	APW42700.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	APW44786.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	APW42838.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
	APW42872.1	GGDEF-domain containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (586 aa)
	APW42927.1	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
	APW42937.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (934 aa)
	APW42978.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (688 aa)
	APW43039.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (662 aa)
	APW44833.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
	APW43187.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)
	APW43188.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1747 aa)
	APW43189.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)
	RS694_12085	Two-component system response regulator; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (710 aa)
	APW43257.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (703 aa)
	APW43318.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1365 aa)
	APW43427.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	APW44869.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	APW43436.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (646 aa)
	APW43565.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (985 aa)
	APW43566.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (979 aa)
	APW43569.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)
	APW43570.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (601 aa)
	APW43571.1	GGDEF domain-containing response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)
	APW43655.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
	APW43704.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (644 aa)
	APW43762.1	Bifunctional diguanylate cyclase/phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (783 aa)
	APW44905.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (767 aa)
	APW43795.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (696 aa)
	APW43838.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (874 aa)
	APW43849.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	APW43976.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (778 aa)
	APW44932.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	APW44110.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1172 aa)
	APW44111.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	APW44951.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1126 aa)
	APW44128.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (702 aa)
	APW44225.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (836 aa)
	APW44227.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (875 aa)
	APW44963.1	EAL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	APW44239.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (620 aa)
	APW44240.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	APW44241.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
	APW44272.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1054 aa)
	APW44320.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
	APW44982.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	APW44321.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (649 aa)
	APW44436.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1785 aa)
	APW44437.1	Diguanylate cyclase response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	APW44511.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (619 aa)
	APW44515.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	APW44538.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
	APW44542.1	Cyclic diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)
	APW44593.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (713 aa)

Your Current Organism:

Rhodoferax saidenbachensis

NCBI taxonomy Id: 1484693
Other names: CCUG 57711, DSM 22694, R. saidenbachensis, Rhodoferax saidenbachensis Kaden et al. 2014, strain ED16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW41143.1	APW41163.1	RS694_00335	RS694_00450	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
APW41143.1	APW41239.1	RS694_00335	RS694_00885	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
APW41143.1	APW41296.1	RS694_00335	RS694_01210	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
APW41143.1	APW41502.1	RS694_00335	RS694_02305	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
APW41143.1	APW41722.1	RS694_00335	RS694_03575	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
APW41143.1	APW41788.1	RS694_00335	RS694_03990	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
APW41143.1	APW41833.1	RS694_00335	RS694_04255	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.585
APW41143.1	APW41861.1	RS694_00335	RS694_04425	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
APW41143.1	APW41932.1	RS694_00335	RS694_04825	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
APW41143.1	APW41976.1	RS694_00335	RS694_05085	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
APW41143.1	APW42031.1	RS694_00335	RS694_05435	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
APW41143.1	APW42134.1	RS694_00335	RS694_06030	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
APW41143.1	APW42137.1	RS694_00335	RS694_06045	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
APW41143.1	APW42158.1	RS694_00335	RS694_06170	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
APW41143.1	APW42162.1	RS694_00335	RS694_06195	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
APW41143.1	APW42307.1	RS694_00335	RS694_06980	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
APW41143.1	APW42369.1	RS694_00335	RS694_07325	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
APW41143.1	APW42429.1	RS694_00335	RS694_07665	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
APW41143.1	APW42435.1	RS694_00335	RS694_07700	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
APW41143.1	APW42440.1	RS694_00335	RS694_07735	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685