(5 nodes) Histidine kinase, and Helix_turn_helix, Lux Regulon network (Rhodoferax saidenbachensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW41637.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	APW41638.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
	APW44869.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	APW43436.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (646 aa)
	APW44241.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)

Your Current Organism:

Rhodoferax saidenbachensis

NCBI taxonomy Id: 1484693
Other names: CCUG 57711, DSM 22694, R. saidenbachensis, Rhodoferax saidenbachensis Kaden et al. 2014, strain ED16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW41637.1	APW41638.1	RS694_03085	RS694_03090	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
APW41637.1	APW43436.1	RS694_03085	RS694_13450	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
APW41637.1	APW44241.1	RS694_03085	RS694_18040	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
APW41638.1	APW41637.1	RS694_03090	RS694_03085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
APW41638.1	APW43436.1	RS694_03090	RS694_13450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
APW41638.1	APW44241.1	RS694_03090	RS694_18040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891
APW41638.1	APW44869.1	RS694_03090	RS694_13445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
APW43436.1	APW41637.1	RS694_13450	RS694_03085	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
APW43436.1	APW41638.1	RS694_13450	RS694_03090	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
APW43436.1	APW44241.1	RS694_13450	RS694_18040	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
APW43436.1	APW44869.1	RS694_13450	RS694_13445	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
APW44241.1	APW41637.1	RS694_18040	RS694_03085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
APW44241.1	APW41638.1	RS694_18040	RS694_03090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891
APW44241.1	APW43436.1	RS694_18040	RS694_13450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
APW44241.1	APW44869.1	RS694_18040	RS694_13445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
APW44869.1	APW41638.1	RS694_13445	RS694_03090	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
APW44869.1	APW43436.1	RS694_13445	RS694_13450	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
APW44869.1	APW44241.1	RS694_13445	RS694_18040	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744