(5 nodes) Protein acylation, and Glutathione S-transferase, C-terminal network (Rhodoferax saidenbachensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW44393.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
	APW44394.1	Thiol:disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily. (237 aa)
	APW44396.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	APW44397.1	Ribosomal-protein-alanine N-acetyltransferase RimI; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	APW44399.1	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)

Your Current Organism:

Rhodoferax saidenbachensis

NCBI taxonomy Id: 1484693
Other names: CCUG 57711, DSM 22694, R. saidenbachensis, Rhodoferax saidenbachensis Kaden et al. 2014, strain ED16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW44393.1	APW44394.1	RS694_18965	RS694_18970	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiol:disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	0.851
APW44393.1	APW44396.1	RS694_18965	RS694_18980	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
APW44393.1	APW44397.1	RS694_18965	RS694_18985	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal-protein-alanine N-acetyltransferase RimI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583
APW44393.1	APW44399.1	RS694_18965	RS694_18995	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583
APW44394.1	APW44393.1	RS694_18970	RS694_18965	Thiol:disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
APW44394.1	APW44396.1	RS694_18970	RS694_18980	Thiol:disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
APW44394.1	APW44397.1	RS694_18970	RS694_18985	Thiol:disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	Ribosomal-protein-alanine N-acetyltransferase RimI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583
APW44394.1	APW44399.1	RS694_18970	RS694_18995	Thiol:disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
APW44396.1	APW44393.1	RS694_18980	RS694_18965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
APW44396.1	APW44394.1	RS694_18980	RS694_18970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiol:disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	0.618
APW44396.1	APW44397.1	RS694_18980	RS694_18985	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal-protein-alanine N-acetyltransferase RimI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
APW44396.1	APW44399.1	RS694_18980	RS694_18995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
APW44397.1	APW44393.1	RS694_18985	RS694_18965	Ribosomal-protein-alanine N-acetyltransferase RimI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583
APW44397.1	APW44394.1	RS694_18985	RS694_18970	Ribosomal-protein-alanine N-acetyltransferase RimI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiol:disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	0.583
APW44397.1	APW44396.1	RS694_18985	RS694_18980	Ribosomal-protein-alanine N-acetyltransferase RimI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
APW44397.1	APW44399.1	RS694_18985	RS694_18995	Ribosomal-protein-alanine N-acetyltransferase RimI; Derived by automated computational analysis using gene prediction method: Protein Homology.	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
APW44399.1	APW44393.1	RS694_18995	RS694_18965	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583
APW44399.1	APW44394.1	RS694_18995	RS694_18970	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiol:disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	0.584
APW44399.1	APW44396.1	RS694_18995	RS694_18980	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
APW44399.1	APW44397.1	RS694_18995	RS694_18985	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal-protein-alanine N-acetyltransferase RimI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837