(5 nodes) Mixed, incl. Cytosolic acyl coenzyme A thioester hydrolase, and Activator of Hsp90 ATPase homolog 1-like protein network (Rhodoferax saidenbachensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW44131.1	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (608 aa)
	APW44132.1	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
	APW44133.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	APW44134.1	RNA signal recognition particle; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
	APW44135.1	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)

Your Current Organism:

Rhodoferax saidenbachensis

NCBI taxonomy Id: 1484693
Other names: CCUG 57711, DSM 22694, R. saidenbachensis, Rhodoferax saidenbachensis Kaden et al. 2014, strain ED16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW44131.1	APW44132.1	RS694_17425	RS694_17430	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
APW44131.1	APW44133.1	RS694_17425	RS694_17435	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
APW44132.1	APW44131.1	RS694_17430	RS694_17425	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
APW44132.1	APW44133.1	RS694_17430	RS694_17435	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
APW44133.1	APW44131.1	RS694_17435	RS694_17425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
APW44133.1	APW44132.1	RS694_17435	RS694_17430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
APW44133.1	APW44134.1	RS694_17435	RS694_17440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA signal recognition particle; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
APW44134.1	APW44133.1	RS694_17440	RS694_17435	RNA signal recognition particle; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
APW44134.1	APW44135.1	RS694_17440	RS694_17445	RNA signal recognition particle; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
APW44135.1	APW44134.1	RS694_17445	RS694_17440	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA signal recognition particle; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832