STRINGSTRING
APW41130.1 APW41130.1 APW44618.1 APW44618.1 APW41131.1 APW41131.1 APW41132.1 APW41132.1 APW41133.1 APW41133.1 APW41134.1 APW41134.1 APW41135.1 APW41135.1 APW41428.1 APW41428.1 APW41429.1 APW41429.1 APW44782.1 APW44782.1 APW42725.1 APW42725.1 APW44783.1 APW44783.1 APW42726.1 APW42726.1 APW42727.1 APW42727.1 APW42796.1 APW42796.1 APW42797.1 APW42797.1 APW42798.1 APW42798.1 APW42799.1 APW42799.1 APW42800.1 APW42800.1 APW42847.1 APW42847.1 APW42875.1 APW42875.1 APW42876.1 APW42876.1 APW42877.1 APW42877.1 APW42878.1 APW42878.1 APW42879.1 APW42879.1 APW42880.1 APW42880.1 APW42881.1 APW42881.1 APW42882.1 APW42882.1 APW42883.1 APW42883.1 APW42884.1 APW42884.1 APW42885.1 APW42885.1 APW42886.1 APW42886.1 APW42887.1 APW42887.1 APW42888.1 APW42888.1 APW42890.1 APW42890.1 APW42891.1 APW42891.1 APW42892.1 APW42892.1 APW42893.1 APW42893.1 APW43199.1 APW43199.1 APW43200.1 APW43200.1 APW43201.1 APW43201.1 RS694_12150 RS694_12150 APW43305.1 APW43305.1 APW43306.1 APW43306.1 APW43307.1 APW43307.1 APW43308.1 APW43308.1 APW43309.1 APW43309.1 APW43391.1 APW43391.1 APW43392.1 APW43392.1 APW43393.1 APW43393.1 APW43394.1 APW43394.1 APW43395.1 APW43395.1 APW43396.1 APW43396.1 APW43397.1 APW43397.1 APW43398.1 APW43398.1 APW44878.1 APW44878.1 APW43729.1 APW43729.1 APW43730.1 APW43730.1 APW44901.1 APW44901.1 APW43731.1 APW43731.1 APW44138.1 APW44138.1 APW44139.1 APW44139.1 APW44140.1 APW44140.1 APW44141.1 APW44141.1 APW44143.1 APW44143.1 APW44209.1 APW44209.1 APW44210.1 APW44210.1 APW44211.1 APW44211.1 APW44212.1 APW44212.1 APW44213.1 APW44213.1 APW44214.1 APW44214.1 APW44215.1 APW44215.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APW41130.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
APW44618.1Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
APW41131.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (291 aa)
APW41132.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (325 aa)
APW41133.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
APW41134.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
APW41135.1Salicylaldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family. (484 aa)
APW41428.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
APW41429.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
APW44782.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
APW42725.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
APW44783.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
APW42726.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (294 aa)
APW42727.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (318 aa)
APW42796.1Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)
APW42797.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (344 aa)
APW42798.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (434 aa)
APW42799.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
APW42800.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
APW42847.1Branched chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
APW42875.1Oxidoreductase; Catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (786 aa)
APW42876.13-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (258 aa)
APW42877.1MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)
APW42878.1enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (287 aa)
APW42879.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
APW42880.12-aminobenzoate-CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (535 aa)
APW42881.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
APW42882.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (306 aa)
APW42883.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (331 aa)
APW42884.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
APW42885.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
APW42886.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
APW42887.1Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)
APW42888.1Catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (399 aa)
APW42890.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
APW42891.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)
APW42892.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (762 aa)
APW42893.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
APW43199.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (361 aa)
APW43200.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (327 aa)
APW43201.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
RS694_12150ABC transporter ATP-binding protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)
APW43305.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
APW43306.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
APW43307.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (334 aa)
APW43308.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (291 aa)
APW43309.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
APW43391.1TIGR04076 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
APW43392.1Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
APW43393.1Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
APW43394.1Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (497 aa)
APW43395.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
APW43396.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
APW43397.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (305 aa)
APW43398.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (314 aa)
APW44878.1Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)
APW43729.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
APW43730.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
APW44901.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (361 aa)
APW43731.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (309 aa)
APW44138.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (298 aa)
APW44139.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (358 aa)
APW44140.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
APW44141.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
APW44143.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
APW44209.1AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
APW44210.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
APW44211.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
APW44212.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (358 aa)
APW44213.1Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (309 aa)
APW44214.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
APW44215.1Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (648 aa)
Your Current Organism:
Rhodoferax saidenbachensis
NCBI taxonomy Id: 1484693
Other names: CCUG 57711, DSM 22694, R. saidenbachensis, Rhodoferax saidenbachensis Kaden et al. 2014, strain ED16
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