(58 nodes) GGDEF domain network (Rhodoferax saidenbachensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW41976.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	APW42031.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (890 aa)
	APW42132.1	Diguanylate cyclase response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
	APW42134.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)
	APW42137.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	APW42158.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
	APW44724.1	REC domain-containing phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (571 aa)
	APW42307.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (543 aa)
	APW42369.1	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (600 aa)
	APW42429.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	APW42457.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	APW42483.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
	APW42677.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (686 aa)
	APW42700.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	APW42872.1	GGDEF-domain containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (586 aa)
	APW42937.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (934 aa)
	APW42978.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (688 aa)
	APW43039.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (662 aa)
	APW44833.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
	RS694_12085	Two-component system response regulator; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (710 aa)
	APW43257.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (703 aa)
	APW43318.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1365 aa)
	APW43427.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	APW43565.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (985 aa)
	APW43566.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (979 aa)
	APW43571.1	GGDEF domain-containing response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)
	APW43655.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
	APW43704.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (644 aa)
	APW43762.1	Bifunctional diguanylate cyclase/phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (783 aa)
	APW44905.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (767 aa)
	APW43849.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	APW43976.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (778 aa)
	APW44932.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	APW44052.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)
	APW44053.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (584 aa)
	APW44951.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1126 aa)
	APW44128.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (702 aa)
	APW44227.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (875 aa)
	APW44272.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1054 aa)
	APW44320.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
	APW44401.1	Diguanylate cyclase AdrA; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	APW44437.1	Diguanylate cyclase response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	APW44511.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (619 aa)
	APW44515.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	APW44593.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (713 aa)
	APW44584.1	GGDEF-domain containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (688 aa)
	APW44538.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
	APW41103.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
	APW41163.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
	APW41239.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	APW41296.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	APW44644.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (832 aa)
	APW41470.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	APW41722.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	APW41833.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	APW41853.1	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
	APW41861.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	APW41932.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)

Your Current Organism:

Rhodoferax saidenbachensis

NCBI taxonomy Id: 1484693
Other names: CCUG 57711, DSM 22694, R. saidenbachensis, Rhodoferax saidenbachensis Kaden et al. 2014, strain ED16

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW41103.1	APW41722.1	RS694_00095	RS694_03575	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
APW41103.1	APW41861.1	RS694_00095	RS694_04425	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
APW41103.1	APW41932.1	RS694_00095	RS694_04825	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
APW41103.1	APW42031.1	RS694_00095	RS694_05435	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
APW41103.1	APW42137.1	RS694_00095	RS694_06045	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
APW41103.1	APW42677.1	RS694_00095	RS694_09125	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
APW41103.1	APW42872.1	RS694_00095	RS694_10225	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF-domain containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
APW41103.1	APW42937.1	RS694_00095	RS694_10590	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
APW41103.1	APW42978.1	RS694_00095	RS694_10830	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
APW41103.1	APW43039.1	RS694_00095	RS694_11190	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
APW41103.1	APW43565.1	RS694_00095	RS694_14170	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
APW41103.1	APW43566.1	RS694_00095	RS694_14175	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
APW41103.1	APW43571.1	RS694_00095	RS694_14210	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
APW41103.1	APW43762.1	RS694_00095	RS694_15280	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bifunctional diguanylate cyclase/phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
APW41103.1	APW43976.1	RS694_00095	RS694_16510	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
APW41103.1	APW44227.1	RS694_00095	RS694_17955	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
APW41103.1	APW44272.1	RS694_00095	RS694_18230	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
APW41103.1	APW44593.1	RS694_00095	RS694_20095	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
APW41103.1	APW44644.1	RS694_00095	RS694_01925	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
APW41103.1	APW44724.1	RS694_00095	RS694_06190	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	REC domain-containing phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542