(7 nodes) ABC transporter type 1, transmembrane domain superfamily network (Rhodoferax saidenbachensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW41598.1	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology. (714 aa)
	APW41795.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (598 aa)
	msbA	Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (579 aa)
	APW43507.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (592 aa)
	APW44917.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (707 aa)
	APW44131.1	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (608 aa)
	APW44196.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)

Your Current Organism:

Rhodoferax saidenbachensis

NCBI taxonomy Id: 1484693
Other names: CCUG 57711, DSM 22694, R. saidenbachensis, Rhodoferax saidenbachensis Kaden et al. 2014, strain ED16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW41598.1	APW43507.1	RS694_02865	RS694_13850	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
APW41598.1	APW44196.1	RS694_02865	RS694_17790	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.681
APW41598.1	APW44917.1	RS694_02865	RS694_15735	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
APW41598.1	msbA	RS694_02865	RS694_09625	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.720
APW43507.1	APW41598.1	RS694_13850	RS694_02865	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
APW43507.1	APW44131.1	RS694_13850	RS694_17425	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
APW44131.1	APW43507.1	RS694_17425	RS694_13850	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
APW44131.1	APW44196.1	RS694_17425	RS694_17790	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
APW44131.1	APW44917.1	RS694_17425	RS694_15735	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
APW44131.1	msbA	RS694_17425	RS694_09625	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.562
APW44196.1	APW41598.1	RS694_17790	RS694_02865	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.681
APW44196.1	APW44131.1	RS694_17790	RS694_17425	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
APW44917.1	APW41598.1	RS694_15735	RS694_02865	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
APW44917.1	APW44131.1	RS694_15735	RS694_17425	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
msbA	APW41598.1	RS694_09625	RS694_02865	Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
msbA	APW44131.1	RS694_09625	RS694_17425	Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562