(48 nodes) ATP-binding cassette (ABC) transporter complex, and ABC-type amino acid transporter activity network (Martelella endophytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJY44911.1	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AJY44912.1	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	AJY44913.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	AJY47885.1	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AJY47886.1	Ornithine cyclodeaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	AJY44914.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AJY44960.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	AJY44961.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	AJY44962.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (262 aa)
	glnQ	Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	AJY47922.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	AJY45092.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
	AJY45093.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	AJY45221.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	AJY47947.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
	AJY45222.1	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	AJY45223.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	AJY45233.1	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AJY45234.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	AJY45235.1	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
	AJY45681.1	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	AJY45785.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	AJY45786.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AJY45853.1	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	AJY45877.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	AJY45878.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	AJY48171.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	AJY46285.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	AJY46286.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	AJY46291.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AJY48172.1	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	AJY48197.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	AJY46403.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	AJY46404.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	AJY46405.1	Amino acid ABC transporter substrate-bindnig protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	AJY47012.1	Glycine/betaine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
	AJY47013.1	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	AJY47014.1	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	AJY48298.1	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	AJY47074.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	AJY48324.1	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
	AJY47508.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AJY48398.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	AJY47509.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	AJY47539.1	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	AJY47540.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	AJY47541.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	AJY47542.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)

Your Current Organism:

Martelella endophytica

NCBI taxonomy Id: 1486262
Other names: KCCM 43011, M. endophytica, Martelella endophytica Bibi et al. 2013, NBRC 109149, strain YC6887

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJY44911.1	AJY44912.1	TM49_03150	TM49_03155	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJY44911.1	AJY44913.1	TM49_03150	TM49_03160	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AJY44911.1	AJY44914.1	TM49_03150	TM49_03175	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AJY44911.1	AJY45221.1	TM49_03150	TM49_05185	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AJY44911.1	AJY45222.1	TM49_03150	TM49_05195	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AJY44911.1	AJY45223.1	TM49_03150	TM49_05200	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AJY44911.1	AJY47885.1	TM49_03150	TM49_03165	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
AJY44911.1	AJY47886.1	TM49_03150	TM49_03170	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ornithine cyclodeaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
AJY44911.1	AJY47947.1	TM49_03150	TM49_05190	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AJY44912.1	AJY44911.1	TM49_03155	TM49_03150	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJY44912.1	AJY44913.1	TM49_03155	TM49_03160	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
AJY44912.1	AJY44914.1	TM49_03155	TM49_03175	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJY44912.1	AJY45221.1	TM49_03155	TM49_05185	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJY44912.1	AJY45222.1	TM49_03155	TM49_05195	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJY44912.1	AJY45223.1	TM49_03155	TM49_05200	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
AJY44912.1	AJY45235.1	TM49_03155	TM49_05270	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AJY44912.1	AJY47012.1	TM49_03155	TM49_17125	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AJY44912.1	AJY47885.1	TM49_03155	TM49_03165	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.702
AJY44912.1	AJY47886.1	TM49_03155	TM49_03170	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ornithine cyclodeaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
AJY44912.1	AJY47947.1	TM49_03155	TM49_05190	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488